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CN-SCN_Pseudonocardia_51x

CN-SCN_Pseudonocardia_dioxanivorans_72_52
In projects: CN-SCN

Consensus taxonomy: Pseudonocardia dioxanivorans  →  Pseudonocardia  →  Pseudonocardiales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 52.07 Longest contig: 137.81 Kbp Bin length: 5.47 Mbp GC content: 72.42 %
Contigs count: 408 Features count: 5682 rRNAs count: 0 tRNAs count: 37

Genome completeness

partial RP 9 / 55 MC: 1 BSCG 8 / 51 MC: 1 ASCG 4 / 38

Description

Partial 9

Displaying items 101-150 of 408 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_21229 PSE51_375
Species: Pseudonocardia dioxanivorans (100%)
6 5400 bp 73.13 54.87 88.39
cn_combo_scaffold_18431 PSE51_367
Species: Pseudonocardia dioxanivorans (100%)
5 6049 bp 73.00 50.34 88.43
cn_combo_scaffold_3723 PSE51_53
Species: Pseudonocardia dioxanivorans (66.67%)
21 21233 bp 72.90 54.37 88.45
cn_combo_scaffold_8823 PSE51_205
Species: Pseudonocardia dioxanivorans (100%)
8 7133 bp 72.87 52.47 88.45
cn_combo_scaffold_5973 PSE51_130
Species: Pseudonocardia dioxanivorans (83.33%)
18 15738 bp 72.60 53.09 88.47
cn_combo_scaffold_4746 PSE51_88
Species: Pseudonocardia dioxanivorans (71.79%)
39 32672 bp 70.66 49.38 88.48
cn_combo_scaffold_9794 PSE51_240
Species: Pseudonocardia dioxanivorans (100%)
4 6440 bp 74.08 52.39 88.56
cn_combo_scaffold_8502 PSE51_195
Species: Pseudonocardia dioxanivorans (87.5%)
8 7351 bp 75.23 50.51 88.56
cn_combo_scaffold_16721 PSE51_363
Species: Pseudonocardia dioxanivorans (100%)
6 5988 bp 73.86 49.53 88.58
cn_combo_scaffold_12476 PSE51_328
Species: Pseudonocardia dioxanivorans (87.5%)
8 6589 bp 72.38 55.27 88.83
cn_combo_scaffold_12847 PSE51_345
Species: Pseudonocardia dioxanivorans (88.89%)
9 7852 bp 73.27 51.11 88.83
cn_combo_scaffold_5347 PSE51_103
Species: Pseudonocardia dioxanivorans (78.26%)
23 27924 bp 71.22 38.73 88.85
cn_combo_scaffold_11748 PSE51_295
Species: Pseudonocardia dioxanivorans (50%)
6 5422 bp 73.33 53.08 88.86
cn_combo_scaffold_5416 PSE51_105
Species: Pseudonocardia dioxanivorans (100%)
14 10952 bp 73.45 53.28 88.86
cn_combo_scaffold_438 PSE51_377
Class: Actinobacteria (75.76%)
99 104244 bp 71.13 53.93 88.86
cn_combo_scaffold_8659 PSE51_200
Species: Pseudonocardia dioxanivorans (50%)
6 7241 bp 73.44 54.30 88.87
cn_combo_scaffold_2430 PSE51_383
Class: Actinobacteria (91.3%)
23 22641 bp 72.85 52.75 88.87
cn_combo_scaffold_17476 PSE51_365
Species: Pseudonocardia dioxanivorans (81.82%)
11 7027 bp 72.93 55.76 88.87
cn_combo_scaffold_2141 PSE51_18
Species: Pseudonocardia dioxanivorans (91.3%)
23 25566 bp 73.78 49.33 89.02
cn_combo_scaffold_4898 PSE51_90
Species: Pseudonocardia dioxanivorans (58.33%)
12 12526 bp 71.16 53.67 89.02
cn_combo_scaffold_10321 PSE51_253
Species: Pseudonocardia dioxanivorans (100%)
7 6138 bp 72.63 52.43 89.05
cn_combo_scaffold_5931 PSE51_128
Species: Pseudonocardia dioxanivorans (64.29%)
14 10099 bp 72.21 54.76 89.09
cn_combo_scaffold_12813 PSE51_343
Species: Pseudonocardia dioxanivorans (71.43%)
7 5011 bp 73.72 47.72 89.14
cn_combo_scaffold_1941 PSE51_13
Species: Pseudonocardia dioxanivorans (92.31%)
26 28049 bp 73.10 54.35 89.18
cn_combo_scaffold_4961 PSE51_91
Species: Pseudonocardia dioxanivorans (96%)
25 26197 bp 73.69 53.26 89.29
cn_combo_scaffold_8623 PSE51_198
Species: Pseudonocardia dioxanivorans (100%)
11 11654 bp 72.09 56.19 89.30
cn_combo_scaffold_11576 PSE51_290
Species: Mycobacterium arupense (71.43%)
7 5499 bp 66.16 8.26 89.31
cn_combo_scaffold_1984 PSE51_14
Species: Pseudonocardia dioxanivorans (92.59%)
27 30020 bp 71.30 55.98 89.32
cn_combo_scaffold_3266 PSE51_43
Species: Pseudonocardia dioxanivorans (94.12%)
17 17524 bp 73.20 53.82 89.36
cn_combo_scaffold_2116 PSE51_17
Species: Pseudonocardia dioxanivorans (58.62%)
29 25926 bp 73.48 53.24 89.37
cn_combo_scaffold_11898 PSE51_305
Species: Pseudonocardia dioxanivorans (100%)
7 5356 bp 71.90 53.01 89.40
cn_combo_scaffold_15136 PSE51_357
Species: Pseudonocardia dioxanivorans (100%)
7 6721 bp 72.98 52.42 89.41
cn_combo_scaffold_7148 PSE51_165
Species: Pseudonocardia dioxanivorans (100%)
9 8553 bp 70.92 53.83 89.41
cn_combo_scaffold_7920 PSE51_397
Order: Pseudonocardiales (63.64%)
11 7824 bp 73.58 53.44 89.42
cn_combo_scaffold_5108 PSE51_97
Species: Pseudonocardia dioxanivorans (56.25%)
16 18422 bp 73.50 51.04 89.53
cn_combo_scaffold_269 PSE51_2
Species: Pseudonocardia dioxanivorans (63.03%)
119 119426 bp 72.25 53.92 89.61
cn_combo_scaffold_6117 PSE51_133
Species: Pseudonocardia dioxanivorans (85.71%)
14 13811 bp 73.06 53.38 89.62
cn_combo_scaffold_2646 PSE51_28
Species: Pseudonocardia dioxanivorans (70%)
30 21130 bp 72.00 53.92 89.68
cn_combo_scaffold_833 PSE51_6
Species: Pseudonocardia dioxanivorans (62.12%)
66 55493 bp 74.32 50.04 89.74
cn_combo_scaffold_1136 PSE51_9
Species: Pseudonocardia dioxanivorans (55.26%)
38 43045 bp 72.41 53.71 89.75
cn_combo_scaffold_4626 PSE51_82
Species: Pseudonocardia dioxanivorans (66.67%)
12 12717 bp 72.83 53.29 89.79
cn_combo_scaffold_4542 PSE51_78
Species: Pseudonocardia dioxanivorans (92.86%)
14 12935 bp 73.89 51.25 89.80
cn_combo_scaffold_3769 PSE51_54
Species: Pseudonocardia dioxanivorans (92.31%)
13 15336 bp 73.26 52.03 89.81
cn_combo_scaffold_3205 PSE51_40
Species: Pseudonocardia dioxanivorans (58.33%)
12 17823 bp 69.54 51.50 89.82
cn_combo_scaffold_6774 PSE51_153
Species: Pseudonocardia dioxanivorans (80%)
10 8989 bp 73.00 51.61 89.88
cn_combo_scaffold_3401 PSE51_46
Species: Pseudonocardia dioxanivorans (65.52%)
29 27649 bp 71.46 52.80 89.88
cn_combo_scaffold_6921 PSE51_160
Species: Pseudonocardia dioxanivorans (61.54%)
13 10080 bp 74.28 48.76 89.88
cn_combo_scaffold_6814 PSE51_155
Species: Pseudonocardia dioxanivorans (73.33%)
15 14047 bp 70.50 55.29 89.91
cn_combo_scaffold_6022 PSE51_131
Species: Pseudonocardia dioxanivorans (69.23%)
13 9963 bp 73.84 52.46 89.94
cn_combo_scaffold_11624 PSE51_292
Species: Mycobacterium arupense (66.67%)
6 5478 bp 68.86 8.76 89.96
Displaying items 101-150 of 408 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.