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CN-SCN_Pseudonocardia_51x

CN-SCN_Pseudonocardia_dioxanivorans_72_52
In projects: CN-SCN

Consensus taxonomy: Pseudonocardia dioxanivorans  →  Pseudonocardia  →  Pseudonocardiales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 52.07 Longest contig: 137.81 Kbp Bin length: 5.47 Mbp GC content: 72.42 %
Contigs count: 408 Features count: 5682 rRNAs count: 0 tRNAs count: 37

Genome completeness

partial RP 9 / 55 MC: 1 BSCG 8 / 51 MC: 1 ASCG 4 / 38

Description

Partial 9

Displaying items 151-200 of 408 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_9335 PSE51_225
Species: Pseudonocardia dioxanivorans (100%)
7 6724 bp 72.86 51.93 89.99
cn_combo_scaffold_9693 PSE51_236
Species: Pseudonocardia dioxanivorans (50%)
6 7004 bp 73.66 55.00 89.99
cn_combo_scaffold_5700 PSE51_120
Species: Pseudonocardia dioxanivorans (81.82%)
11 10473 bp 73.59 52.59 90.00
cn_combo_scaffold_2909 PSE51_32
Species: Pseudonocardia dioxanivorans (77.27%)
22 31487 bp 73.84 52.25 90.05
cn_combo_scaffold_3881 PSE51_56
Species: Pseudonocardia dioxanivorans (87.5%)
16 14977 bp 73.53 51.68 90.08
cn_combo_scaffold_10367 PSE51_254
Species: Pseudonocardia dioxanivorans (100%)
9 9207 bp 73.88 53.54 90.09
cn_combo_scaffold_9284 PSE51_222
Class: Actinobacteria (76.92%)
13 10587 bp 71.51 54.49 90.18
cn_combo_scaffold_7385 PSE51_174
Species: Pseudonocardia dioxanivorans (100%)
9 8315 bp 74.31 52.65 90.20
cn_combo_scaffold_8441 PSE51_193
Species: Pseudonocardia dioxanivorans (100%)
7 7396 bp 71.61 53.18 90.21
cn_combo_scaffold_5092 PSE51_96
Species: Pseudonocardia dioxanivorans (100%)
12 11563 bp 72.73 53.08 90.24
cn_combo_scaffold_4728 PSE51_87
Species: Pseudonocardia dioxanivorans (52.63%)
19 12420 bp 73.24 52.52 90.28
cn_combo_scaffold_2366 PSE51_23
Order: Pseudonocardiales (50%)
22 23164 bp 73.34 51.92 90.30
cn_combo_scaffold_9454 PSE51_229
Species: Pseudonocardia dioxanivorans (76.92%)
13 9654 bp 72.56 54.03 90.30
cn_combo_scaffold_6152 PSE51_135
Species: Pseudonocardia dioxanivorans (100%)
12 9789 bp 72.77 56.31 90.41
cn_combo_scaffold_9865 PSE51_242
Species: Pseudonocardia dioxanivorans (100%)
8 6403 bp 73.09 56.46 90.43
cn_combo_scaffold_7937 PSE51_182
Species: Pseudonocardia dioxanivorans (83.33%)
6 7809 bp 72.76 55.31 90.43
cn_combo_scaffold_4274 PSE51_70
Species: Pseudonocardia dioxanivorans (100%)
13 13706 bp 74.95 52.42 90.44
cn_combo_scaffold_11861 PSE51_304
Species: Pseudonocardia dioxanivorans (100%)
5 5373 bp 70.78 54.79 90.51
cn_combo_scaffold_9595 PSE51_234
Species: Pseudonocardia dioxanivorans (87.5%)
8 6556 bp 71.02 53.65 90.51
cn_combo_scaffold_365 PSE51_4
Order: Pseudonocardiales (56.52%)
92 94926 bp 73.16 52.24 90.54
cn_combo_scaffold_7247 PSE51_172
Species: Pseudonocardia dioxanivorans (100%)
11 8455 bp 72.67 53.93 90.62
cn_combo_scaffold_5570 PSE51_115
Species: Pseudonocardia dioxanivorans (54.55%)
11 10711 bp 73.32 53.21 90.64
cn_combo_scaffold_13662 PSE51_351
Species: Pseudonocardia dioxanivorans (100%)
6 7195 bp 73.54 51.76 90.65
cn_combo_scaffold_13809 PSE51_353
Species: Pseudonocardia dioxanivorans (88.89%)
9 8769 bp 70.82 51.81 90.66
cn_combo_scaffold_8794 PSE51_204
Species: Pseudonocardia dioxanivorans (92.86%)
14 13578 bp 73.54 50.32 90.72
cn_combo_scaffold_5897 PSE51_126
Species: Pseudonocardia dioxanivorans (84.21%)
19 16239 bp 71.83 52.92 90.73
cn_combo_scaffold_9292 PSE51_223
Species: Pseudonocardia dioxanivorans (50%)
6 6757 bp 71.30 54.68 90.75
cn_combo_scaffold_9315 PSE51_224
Species: Pseudonocardia dioxanivorans (100%)
6 6740 bp 74.54 52.46 90.76
cn_combo_scaffold_3255 PSE51_42
Species: Pseudonocardia dioxanivorans (88.24%)
17 17570 bp 73.80 52.71 90.79
cn_combo_scaffold_429 PSE51_376a
Class: Actinobacteria (57.33%)
75 84891 bp 69.15 53.21 90.83
cn_combo_scaffold_5708 PSE51_122
Species: Pseudonocardia dioxanivorans (75%)
20 16929 bp 72.53 52.27 90.89
cn_combo_scaffold_4109 PSE51_64
Species: Pseudonocardia dioxanivorans (90%)
10 14266 bp 74.49 50.55 91.01
cn_combo_scaffold_12513 PSE51_329
Species: Pseudonocardia dioxanivorans (100%)
8 5117 bp 74.46 46.43 91.05
cn_combo_scaffold_8665 PSE51_201
Species: Pseudonocardia dioxanivorans (88.89%)
9 8306 bp 74.30 52.23 91.05
cn_combo_scaffold_3178 PSE51_39
Species: Pseudonocardia dioxanivorans (75.68%)
37 30736 bp 73.80 53.76 91.06
cn_combo_scaffold_9367 PSE51_226
Species: Mycobacterium arupense (66.67%)
6 6703 bp 68.52 9.80 91.08
cn_combo_scaffold_9942 PSE51_243
Species: Pseudonocardia dioxanivorans (85.71%)
7 6803 bp 73.75 52.20 91.15
cn_combo_scaffold_9225 PSE51_219
Species: Pseudonocardia dioxanivorans (71.43%)
7 6818 bp 73.13 52.43 91.17
cn_combo_scaffold_2403 PSE51_25
Species: Pseudonocardia dioxanivorans (94.12%)
34 38357 bp 73.27 52.10 91.23
cn_combo_scaffold_5080 PSE51_95
Species: Pseudonocardia dioxanivorans (80%)
15 11604 bp 73.45 54.80 91.24
cn_combo_scaffold_4720 PSE51_85
Species: Pseudonocardia dioxanivorans (100%)
11 12438 bp 74.87 48.66 91.27
cn_combo_scaffold_2048 PSE51_16
Species: Pseudonocardia dioxanivorans (55.26%)
38 34965 bp 73.45 51.26 91.28
cn_combo_scaffold_6118 PSE51_134
Species: Pseudonocardia dioxanivorans (78.57%)
28 24766 bp 73.98 53.29 91.29
cn_combo_scaffold_5555 PSE51_113
Species: Pseudonocardia dioxanivorans (71.43%)
14 10748 bp 75.21 49.77 91.30
cn_combo_scaffold_7282 PSE51_173
Species: Pseudonocardia dioxanivorans (77.78%)
9 8415 bp 72.26 55.46 91.30
cn_combo_scaffold_7182 PSE51_166
Species: Pseudonocardia dioxanivorans (68.75%)
16 14892 bp 73.21 54.19 91.32
cn_combo_scaffold_5929 PSE51_127
Class: Actinobacteria (77.78%)
18 12290 bp 73.09 51.64 91.33
cn_combo_scaffold_934 PSE51_7
Species: Pseudonocardia dioxanivorans (71.11%)
45 51529 bp 72.71 52.16 91.37
cn_combo_scaffold_2179 PSE51_20
Class: Actinobacteria (65.22%)
23 25051 bp 71.97 53.03 91.39
cn_combo_scaffold_9179 PSE51_218
Species: Pseudonocardia dioxanivorans (100%)
8 6857 bp 73.49 51.93 91.40
Displaying items 151-200 of 408 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.