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cn_combo_scaffold_2516

Alias: PSE87_21

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2516_1
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(56..2971)
DNA (2916bp) protein (972aa)
Transcriptional regulator, LuxR family n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CKU8_PSEUX
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEA23941.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia di
LuxR family transcriptional regulator
cn_combo_scaffold_2516_2
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2991..4142
DNA (1152bp) protein (384aa)
Amidohydrolase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CKU7_PSEUX
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:AEA23940.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC
cn_combo_scaffold_2516_3
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

4207..4872
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B7A79B
Alternative oxidase {ECO:0000313|EMBL:KJE77438.1}; TaxID=1121877 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrimicrobium.;" source="Ferrimicrobium acidip
hypothetical protein
cn_combo_scaffold_2516_4
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4925..5887)
DNA (963bp) protein (321aa)
Transcriptional regulator n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CKU6_PSEUX
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AEA23939.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (
cn_combo_scaffold_2516_5
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5906..6469
DNA (564bp) protein (188aa)
NUDIX hydrolase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CKU5_PSEUX
NUDIX hydrolase rbh
NUDIX hydrolase {ECO:0000313|EMBL:AEA23938.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATC
cn_combo_scaffold_2516_6
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6456..7628
DNA (1173bp) protein (391aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1)
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:AEA23937.1}; EC=1.3.8.1 {ECO:0000313|EMBL:AEA23937.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardi
Butyryl-CoA dehydrogenase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CKU4_PSEUX
cn_combo_scaffold_2516_7
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(7667..8026)
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI0003757F9F
HxlR family transcriptional regulator
HxlR family transcriptional regulator {ECO:0000313|EMBL:AGL13596.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N90
cn_combo_scaffold_2516_8
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8147..8980
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI000366FFED
NmrA family protein
NmrA family protein {ECO:0000313|EMBL:AGL13595.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
cn_combo_scaffold_2516_9
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8961..9710)
DNA (750bp) protein (250aa)
Methyltransferase type 11 n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CKU3_PSEUX
type 11 methyltransferase rbh
Methyltransferase type 11 {ECO:0000313|EMBL:AEA23936.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (
cn_combo_scaffold_2516_10
Mycobacterium rhodesiae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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9790..10374
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEF22
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV74314.1}; TaxID=710685 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium rhodesiae (strain NBB
cn_combo_scaffold_2516_11
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10451..11695)
DNA (1245bp) protein (415aa)
linalool 8-monooxygenase (EC:1.14.99.28)
Linalool 8-monooxygenase {ECO:0000313|EMBL:AEA23935.1}; EC=1.14.99.28 {ECO:0000313|EMBL:AEA23935.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocar
Linalool 8-monooxygenase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CKU2_PSEUX
cn_combo_scaffold_2516_12
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11709..12431)
DNA (723bp) protein (241aa)
Regulatory protein TetR n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CKU1_PSEUX
TetR family transcriptional regulator
Regulatory protein TetR {ECO:0000313|EMBL:AEA23934.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (st
cn_combo_scaffold_2516_13
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12484..13257
DNA (774bp) protein (258aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJ83_PSEUX
enoyl-CoA hydratase rbh
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:AEA23933.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivora
cn_combo_scaffold_2516_14
Legionella pneumophila, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13377..14828
DNA (1452bp) protein (484aa)
Long-chain acyl-CoA synthetase n=7 Tax=Legionella pneumophila RepID=R9SB32_LEGPN
hypothetical protein
Long-chain-fatty-acid--CoA ligase FadD13 {ECO:0000313|EMBL:GAN26297.1}; TaxID=446 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionell
cn_combo_scaffold_2516_15
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14897..15763
DNA (867bp) protein (289aa)
ABC-type transporter, periplasmic subunit family 3 n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJ82_PSEUX
ABC transporter substrate-binding protein rbh
ABC-type transporter, periplasmic subunit family 3 {ECO:0000313|EMBL:AEA23932.1}; Flags: Precursor;; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocard
cn_combo_scaffold_2516_16
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15770..16564)
DNA (795bp) protein (265aa)
ectoine/hydroxyectoine ABC transporter ATP-binding protein (EC:3.6.3.30)
Ectoine/hydroxyectoine ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AEA23931.1}; EC=3.6.3.30 {ECO:0000313|EMBL:AEA23931.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales
Ectoine/hydroxyectoine ABC transporter, ATP-binding protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJ81_PSEUX
cn_combo_scaffold_2516_17
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16551..17204)
DNA (654bp) protein (218aa)
Ectoine/hydroxyectoine ABC transporter, permease protein EhuD n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJ80_PSEUX
ectoine/hydroxyectoine ABC transporter permease EhuD
Ectoine/hydroxyectoine ABC transporter, permease protein EhuD {ECO:0000313|EMBL:AEA23930.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" so
cn_combo_scaffold_2516_18
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17201..17908)
DNA (708bp) protein (236aa)
Ectoine/hydroxyectoine ABC transporter, permease protein EhuC n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJ79_PSEUX
ectoine/hydroxyectoine ABC transporter permease EhuC rbh
Ectoine/hydroxyectoine ABC transporter, permease protein EhuC {ECO:0000313|EMBL:AEA23929.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" so
cn_combo_scaffold_2516_19
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17919..18815)
DNA (897bp) protein (299aa)
Ectoine/hydroxyectoine ABC transporter solute-binding protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJ78_PSEUX
ectoine/hydroxyectoine ABC transporter solute-binding protein
Ectoine/hydroxyectoine ABC transporter solute-binding protein {ECO:0000313|EMBL:AEA23928.1}; Flags: Precursor;; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; P
cn_combo_scaffold_2516_20
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19040..19894
DNA (855bp) protein (285aa)
Ribulose bisphosphate carboxylase large chain n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJ77_PSEUX
ribulose bisphosphate carboxylase large chain
Ribulose bisphosphate carboxylase large chain {ECO:0000313|EMBL:AEA23927.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonoca
Probably not RuBisCO. No conserved domains detected. Rose Kantor (4/23/14)
cn_combo_scaffold_2516_21
unknown

Not on your lists

comp(20234..20353)
DNA (120bp) protein (40aa)

This feature has no annotations

cn_combo_scaffold_2516_22
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20422..21996)
DNA (1575bp) protein (525aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
Methylmalonyl-CoA mutase, large subunit {ECO:0000313|EMBL:AEA23926.1}; EC=5.4.99.2 {ECO:0000313|EMBL:AEA23926.1};; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae
Methylmalonyl-CoA mutase, large subunit n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJ76_PSEUX
Displaying 22 items

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