ggKbase home page

cn_combo_scaffold_3462

Alias: PSE87_42

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_3462_1
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..400
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CKY7_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA24366.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (st
cn_combo_scaffold_3462_2
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

542..1000
DNA (459bp) protein (153aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CKY8_PSEUX
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:AEA24367.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonoca
cn_combo_scaffold_3462_trna_1
unknown

Not on your lists

1032..1103
DNA (72bp)
transferRNA
cn_combo_scaffold_3462_3
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1267..3000
DNA (1734bp) protein (578aa)
Integrase family protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXH6_PSEUX
integrase protein
Integrase family protein {ECO:0000313|EMBL:AEA26550.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (s
cn_combo_scaffold_3462_4
Actinopolyspora erythraea, Actinopolyspora, Actinopolysporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3048..3608
DNA (561bp) protein (187aa)
metal dependent phosphohydrolase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEF5E
Phosphohydrolase {ECO:0000313|EMBL:KGI82904.1}; TaxID=414996 species="Bacteria; Actinobacteria; Actinopolysporales; Actinopolysporaceae; Actinopolyspora.;" source="Actinopolyspora erythraea.;"
metal dependent phosphohydrolase
cn_combo_scaffold_3462_5
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3599..4069)
DNA (471bp) protein (157aa)
NUDIX hydrolase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEF5D
NUDIX hydrolase {ECO:0000313|EMBL:CEL22020.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
NUDIX hydrolase
cn_combo_scaffold_3462_6
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4082..4825)
DNA (744bp) protein (248aa)
XRE family transcriptional regulator n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEF5C
XRE family transcriptional regulator rbh
XRE family transcriptional regulator {ECO:0000313|EMBL:AEK46599.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis medite
cn_combo_scaffold_3462_7
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4977..5255
DNA (279bp) protein (93aa)
DNA binding domain protein, excisionase family n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXH2_PSEUX
excisionase
DNA binding domain protein, excisionase family {ECO:0000313|EMBL:AEA26546.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonoc
cn_combo_scaffold_3462_8
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5252..5488
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXH1_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA26545.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (st
cn_combo_scaffold_3462_9
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5485..6120
DNA (636bp) protein (212aa)
transcriptional regulator n=1 Tax=Actinomadura atramentaria RepID=UPI00036CBD0A
transcription factor WhiB
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=471852 species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora c
cn_combo_scaffold_3462_10
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6351..7019
DNA (669bp) protein (223aa)
TrwC relaxase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CK94_PSEUX
TrwC relaxase
TrwC relaxase {ECO:0000313|EMBL:AEA22317.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC
cn_combo_scaffold_3462_11
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7488..9296
DNA (1809bp) protein (603aa)
TrwC relaxase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CK94_PSEUX
TrwC relaxase
TrwC relaxase {ECO:0000313|EMBL:AEA22317.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC
cn_combo_scaffold_3462_12
unknown

Not on your lists

comp(9266..9715)
DNA (450bp) protein (150aa)

This feature has no annotations

cn_combo_scaffold_3462_13
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10100..10951)
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI00037C43A8
paaX-like family protein
PaaX-like family protein {ECO:0000313|EMBL:AJZ61963.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fung
cn_combo_scaffold_3462_14
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11083..11892
DNA (810bp) protein (270aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XKG5_NAKMY
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACV78727.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita
cn_combo_scaffold_3462_15
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11927..13141)
DNA (1215bp) protein (405aa)
Peroxisomal hydratase-dehydrogenase-epimerase n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5HPC4_9ACTO
coA-transferase III family protein
CoA-transferase III family protein {ECO:0000313|EMBL:AJZ64065.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkhol
cn_combo_scaffold_3462_16
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13138..14352)
DNA (1215bp) protein (405aa)
Cytochrome P450 n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0K0E9_CUPNH
cytochrome P450 family protein
Cytochrome P450 family protein {ECO:0000313|EMBL:AJZ61226.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderi
cn_combo_scaffold_3462_17
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14606..15649
DNA (1044bp) protein (348aa)
beta-lactamase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE34A
Beta lactamase {ECO:0000313|EMBL:EWM64257.1}; TaxID=457406 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
beta-lactamase class B
cn_combo_scaffold_3462_18
Capronia epimyces, Capronia, Chaetothyriales, Chaetothyriomycetidae, Ascomycota, Fungi

Not on your lists

15819..16274
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00030D0898
Uncharacterized protein {ECO:0000313|EMBL:EXJ92017.1}; TaxID=1182542 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Chaetothyriomycetidae; Chaetothyriales; Herpotrichi
cn_combo_scaffold_3462_19
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16514..16615)
DNA (102bp) protein (34aa)
Putative short chain dehydrogenase n=1 Tax=Frankia alni (strain ACN14a) RepID=Q0RK55_FRAAA
short chain dehydrogenase
Uncharacterized protein {ECO:0000313|EMBL:EIV91896.1}; TaxID=710111 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
Displaying 20 items

View Taxonomy