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cn_combo_scaffold_2945

Alias: VAR87_62a

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2945_1
Pseudomonas batumici, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(110..922)
DNA (813bp) protein (271aa)
Short chain dehydrogenase(EC:1.-) {ECO:0000313|EMBL:KIH83774.1}; TaxID=226910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomo
putative short chain (glucose/xylose) dehydrogenase (EC:1.1.1.-)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM18 RepID=J2N2J9_9PSED
cn_combo_scaffold_2945_2
unknown

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comp(932..1099)
DNA (168bp) protein (56aa)

This feature has no annotations

cn_combo_scaffold_2945_3
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1127..1978)
DNA (852bp) protein (284aa)
Aldo/keto reductase, diketogulonate reductase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WVM5_9BURK
Aldo/keto reductase, diketogulonate reductase {ECO:0000313|EMBL:EHR69536.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JO
aldo/keto reductase
cn_combo_scaffold_2945_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2035..4230)
DNA (2196bp) protein (732aa)
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein n=1 Tax=Acidovorax sp. CF316 RepID=J0UDD6_9BURK
Variovorax paradoxus strain MEDvA23 contig_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22973.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
acylaldehyde oxidase
cn_combo_scaffold_2945_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4234..5184)
DNA (951bp) protein (317aa)
Oxidoreductase, molybdopterin-binding subunit n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JN05_AGRRK
Variovorax paradoxus strain MEDvA23 contig_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22972.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
oxidoreductase, molybdopterin-binding subunit
cn_combo_scaffold_2945_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5181..5837)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Duganella zoogloeoides RepID=UPI0003693191
Variovorax paradoxus strain MEDvA23 contig_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22971.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
(2Fe-2S)-binding domain protein
cn_combo_scaffold_2945_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5975..6964
DNA (990bp) protein (330aa)
Transcriptional regulator (Fragment) n=1 Tax=Acidovorax sp. CF316 RepID=J0UDD2_9BURK
Variovorax paradoxus strain MEDvA23 contig_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22970.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
LysR family transcriptional regulator
cn_combo_scaffold_2945_8
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7532..8992)
DNA (1461bp) protein (487aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000371481D
Nucleoside-diphosphate-sugar epimerase
Cupriavidus basilensis strain 4G11 chromosome main, complete sequence {ECO:0000313|EMBL:AJG19842.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiacea
cn_combo_scaffold_2945_9
unknown

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comp(9086..9205)
DNA (120bp) protein (40aa)

This feature has no annotations

cn_combo_scaffold_2945_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9319..10410
DNA (1092bp) protein (364aa)
myristoyl transferase n=1 Tax=Variovorax paradoxus RepID=UPI00037EA4E7
Variovorax paradoxus strain MEDvA23 contig_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37211.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
NMT1/THI5 like domain-containing protein
cn_combo_scaffold_2945_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10415..11242
DNA (828bp) protein (276aa)
ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003808F06
Variovorax paradoxus strain MEDvA23 contig_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37194.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
ABC transporter
cn_combo_scaffold_2945_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11239..12066
DNA (828bp) protein (276aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00036E5E57
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACS18548.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderial
cn_combo_scaffold_2945_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12059..13021
DNA (963bp) protein (321aa)
Extracellular solute-binding protein family 3 n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CV98_VARPS
Variovorax paradoxus strain MEDvA23 contig_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ37192.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
family 3 extracellular solute-binding protein
cn_combo_scaffold_2945_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13216..14151
DNA (936bp) protein (312aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CW26_VARPS
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACS16724.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovo
cn_combo_scaffold_2945_15
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14479..15498)
DNA (1020bp) protein (340aa)
NAD-dependent dehydratase n=1 Tax=Ralstonia sp. AU12-08 RepID=S9TB30_9RALS
NAD-dependent dehydratase {ECO:0000313|EMBL:KHK49581.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.
NAD dependent epimerase/dehydratase family protein
cn_combo_scaffold_2945_16
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15515..15967
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000375C672
MerR family transcriptional regulator {ECO:0000313|EMBL:KJU77753.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleov
MerR family transcriptional regulator
cn_combo_scaffold_2945_17
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16033..16716
DNA (684bp) protein (228aa)
dimethyl sulfoxide reductase subunit C n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0003748B29
Uncharacterized protein {ECO:0000313|EMBL:AIO26127.1}; TaxID=983594 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex
hypothetical protein
cn_combo_scaffold_2945_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16928..17437
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9N6_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU35084.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (
cn_combo_scaffold_2945_19
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17651..18133)
DNA (483bp) protein (161aa)
elongation factor GreAB n=1 Tax=Acidovorax radicis RepID=UPI0002375BDD
transcription elongation factor grea/greb domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
transcription elongation factor grea/greb domain-containing protein
cn_combo_scaffold_2945_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18454..18957
DNA (504bp) protein (168aa)
DTW domain containing protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V1X4_VARPE
Variovorax paradoxus strain MEDvA23 contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34672.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
dtw domain containing protein
cn_combo_scaffold_2945_21
unknown

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18968..19189
DNA (222bp) protein (74aa)

This feature has no annotations

Displaying 21 items

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