ggKbase home page

cn_combo_scaffold_2785

Alias: VAR87_42

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2785_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..489)
DNA (489bp) protein (163aa)
Phosphonoacetate hydrolase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5Q0_VARPE
phosphonoacetate hydrolase
Phosphonoacetate hydrolase {ECO:0000313|EMBL:ADU35947.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxu
cn_combo_scaffold_2785_2
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(549..1859)
DNA (1311bp) protein (437aa)
major facilitator transporter n=1 Tax=Variovorax paradoxus RepID=UPI00036B8F97
Major facilitator transporter {ECO:0000313|EMBL:EYS93386.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus s
phnB; 2-phosphonopropionate transporter
cn_combo_scaffold_2785_3
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1956..3047)
DNA (1092bp) protein (364aa)
mdh1; NAD-dependent methanol dehydrogenase Mdh (EC:1.1.1.244)
NAD-dependent methanol dehydrogenase Mdh {ECO:0000313|EMBL:AEI79765.1}; EC=1.1.1.244 {ECO:0000313|EMBL:AEI79765.1};; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiale
alcohol dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI0003772ADE
cn_combo_scaffold_2785_4
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3260..4126
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036E6BFD
LysR family transcriptional regulator {ECO:0000313|EMBL:EYS93388.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupri
LysR family transcriptional regulator
cn_combo_scaffold_2785_5
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4198..4740)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037D6380
ferric uptake regulator family protein
Ferric uptake regulator family {ECO:0000313|EMBL:CAD84641.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomo
cn_combo_scaffold_2785_6
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4816..6495)
DNA (1680bp) protein (560aa)
Cyclic peptide transporter n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BM30_DELAS
cyclic peptide transporter
Cyclic peptide transporter {ECO:0000313|EMBL:ABX37375.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (s
cn_combo_scaffold_2785_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6537..6776)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000373E9BA
Variovorax paradoxus strain MEDvA23 contig_58, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26801.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
hypothetical protein
cn_combo_scaffold_2785_8
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6933..7706
DNA (774bp) protein (258aa)
Ferric iron reductase protein FhuF n=1 Tax=Thauera phenylacetica B4P RepID=N6ZXN4_9RHOO
putative ferric iron reductase
Ferric iron reductase protein FhuF {ECO:0000313|EMBL:ENO99103.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenyla
cn_combo_scaffold_2785_9
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7772..9856
DNA (2085bp) protein (695aa)
Alpha/beta hydrolase domain-containing protein n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AUV5_DELSC
Esterase {ECO:0000313|EMBL:KEH09760.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
alpha/beta hydrolase domain-containing protein
cn_combo_scaffold_2785_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9838..11154
DNA (1317bp) protein (439aa)
L-lysine 6-monooxygenase (NADPH) (EC:1.14.13.59)
L-lysine 6-monooxygenase (NADPH) n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7Z9_NITMU
Ornithine monooxygenase {ECO:0000313|EMBL:KIO49787.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
cn_combo_scaffold_2785_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11291..11923
DNA (633bp) protein (211aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Variovorax sp. CF313 RepID=J3CJS6_9BURK
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJL72916.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="
ECF subfamily RNA polymerase sigma-24 subunit
cn_combo_scaffold_2785_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11932..12999
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036530B1
Fe2+-dicitrate sensor, membrane component {ECO:0000313|EMBL:EJL72915.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
anti-FecI sigma factor FecR
cn_combo_scaffold_2785_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13126..15516
DNA (2391bp) protein (797aa)
TonB-dependent siderophore receptor n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9K1_VARPE
TonB-dependent siderophore receptor {ECO:0000313|EMBL:ADU35049.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
tonb-dependent siderophore receptor
cn_combo_scaffold_2785_14
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15626..20134)
DNA (4509bp) protein (1503aa)
Uncharacterized protein (Fragment) n=1 Tax=Pseudomonas aeruginosa BWHPSA019 RepID=U8RTE2_PSEAI
Amino acid adenylation domain protein {ECO:0000313|EMBL:EZP45284.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp
PpsD
Displaying 14 items

View Taxonomy