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cn_combo_scaffold_6564

Alias: VAR87_47

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_6564_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..1077)
DNA (1077bp) protein (359aa)
rpoC; DNA-directed RNA polymerase, subunit beta' RpoC (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' n=1 Tax=Variovorax paradoxus B4 RepID=T1X5J3_VARPD
cn_combo_scaffold_6564_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1099..5223)
DNA (4125bp) protein (1375aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=2 Tax=Bacteria RepID=J2TFY6_9BURK
DNA-directed RNA polymerase subunit beta
cn_combo_scaffold_6564_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5474..5848)
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 n=2 Tax=Variovorax paradoxus RepID=RL7_VARPS
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000255|HAMAP-Rule:MF_00368}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax pa
cn_combo_scaffold_6564_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5890..6429)
DNA (540bp) protein (180aa)
50S ribosomal protein L10 n=1 Tax=Variovorax paradoxus RepID=UPI00037585E7
rplJ; 50S ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variov
cn_combo_scaffold_6564_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6676..7374)
DNA (699bp) protein (233aa)
50S ribosomal protein L1 n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6J8_VARPE
50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax parado
cn_combo_scaffold_6564_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7375..7806)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Variovorax sp. CF313 RepID=J2KW88_9BURK
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variov
rplK; 50S ribosomal protein L11
cn_combo_scaffold_6564_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7951..8562)
DNA (612bp) protein (204aa)
Transcription termination/antitermination protein NusG n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6J6_VARPE
nusg antitermination factor
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderi
cn_combo_scaffold_6564_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8563..8946)
DNA (384bp) protein (128aa)
Preprotein translocase, SecE subunit n=2 Tax=Variovorax RepID=E6V6J5_VARPE
preprotein translocase subunit SecE
Preprotein translocase, SecE subunit {ECO:0000313|EMBL:ADU34858.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovora
cn_combo_scaffold_6564_trna_1
unknown

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comp(9051..9123)
DNA (73bp)
transferRNA
cn_combo_scaffold_6564_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9145..9240)
DNA (96bp) protein (32aa)
Elongation factor Tu n=1 Tax=Variovorax paradoxus B4 RepID=T1XHY7_VARPD
translation elongation factor tu
Translation elongation factor-like GTPase {ECO:0000313|EMBL:EJL77525.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
Displaying 10 items

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