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gwc2_scaffold_137

Alias: PER_GWC2_39_17_3

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Displaying items 1-30 of 106 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwc2_scaffold_137_1
zPERA2_38_36, Peregrinibacteria, Bacteria

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2..583
-----------------
DNA (582bp)
protein (194aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=2 Tax=Desulfosporosinus RepID=G7WE38_DESOD
Uncharacterized protein {ECO:0000313|EMBL:KKQ71913.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
extracellular ligand-binding receptor
(db=HMMPfam db_id=PF01094 from=2 to=184 evalue=3.4e-17 interpro_id=IPR001828 interpro_description=Extracellular ligand-binding receptor)
gwc2_scaffold_137_2
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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583..1053
-----------------
DNA (471bp)
protein (157aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLU1_NIAKG
ABC transporter, branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:KKR06814.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW
ABC transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwc2_scaffold_137_3
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

1022..1405
-----------------
DNA (384bp)
protein (128aa)
Inner-membrane translocator n=1 Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SCM2_PELPB
Inner-membrane translocator {ECO:0000313|EMBL:KKQ71914.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
inner-membrane translocator
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
gwc2_scaffold_137_4
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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1408..2298
-----------------
DNA (891bp)
protein (297aa)
Inner-membrane translocator n=1 Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SCM1_PELPB
Inner-membrane translocator, branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:KKR06816.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria
inner-membrane translocator
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
gwc2_scaffold_137_5
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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2295..3029
-----------------
DNA (735bp)
protein (245aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XUG4_9FIRM
ABC-type branched-chain amino acid transport system, ATPase component, branched-chain amino acid transport system ATP-binding protein {ECO:0000313|EMBL:KKR06817.1}; TaxID=1619062 species="Bacteria; Pe
branched-chain amino acid ABC transporter ATP-binding protein
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=145 to=159 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
gwc2_scaffold_137_6
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

3036..3758
-----------------
DNA (723bp)
protein (241aa)
Putative uncharacterized protein n=1 Tax=Bacillus smithii 7_3_47FAA RepID=G9QIT3_9BACI
Putative uncharacterized protein Tax=zPERA2_38_36
ABC transporter-like protein
seg (db=Seg db_id=seg from=171 to=183)
gwc2_scaffold_137_7
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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3785..4711
-----------------
DNA (927bp)
protein (309aa)
Aspartate carbamoyltransferase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6L6_CALAS rbh
Aspartate carbamoyltransferase {ECO:0000313|EMBL:KKR06819.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
pyrB; aspartate carbamoyltransferase
seg (db=Seg db_id=seg from=72 to=84)
gwc2_scaffold_137_8
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

4727..5962
-----------------
DNA (1236bp)
protein (412aa)
dihydroorotase (EC:3.5.2.3)
Dihydroorotase, multifunctional complex type n=4 Tax=root RepID=B5EQR8_ACIF5 rbh
Dihydroorotase, multifunctional complex type {ECO:0000313|EMBL:KKQ71919.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
seg (db=Seg db_id=seg from=9 to=28)
gwc2_scaffold_137_9
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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5982..6908
-----------------
DNA (927bp)
protein (309aa)
Dihydroorotate dehydrogenase, dihydroorotate dehydrogenase (Fumarate) {ECO:0000313|EMBL:KKR06821.1}; EC=1.3.98.1 {ECO:0000313|EMBL:KKR06821.1};; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" s
Dihydroorotate dehydrogenase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I5K6_CALAS
pyrD; dihydroorotate dehydrogenase
seg (db=Seg db_id=seg from=258 to=272)
gwc2_scaffold_137_10
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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6979..10650
-----------------
DNA (3672bp)
protein (1224aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR06822.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
seg (db=Seg db_id=seg from=3 to=27)
coiled-coil (db=Coil db_id=coil from=740 to=761 evalue=NA)
gwc2_scaffold_137_11
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(10659..10913)
-----------------
DNA (255bp)
protein (85aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR06823.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=44 to=67)
gwc2_scaffold_137_12
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

11208..11852
-----------------
DNA (645bp)
protein (215aa)
orotidine 5'-phosphate decarboxylase (EC:2.4.2.10 4.1.1.23)
Orotate phosphoribosyltransferase n=2 Tax=Lactobacillus murinus ASF361 RepID=N2A2J8_9LACO
Orotate phosphoribosyltransferase {ECO:0000313|EMBL:KKQ71923.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
(db=HMMPfam db_id=PF00156 from=46 to=141 evalue=5.0e-15 interpro_id=IPR000836 interpro_description=Phosphoribosyltransferase GO=Biological Process: nucleoside metabolic process (GO:0009116))
gwc2_scaffold_137_13
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

11859..12314
-----------------
DNA (456bp)
protein (152aa)
Tax=zPERA2_38_36
gwc2_scaffold_137_14
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

12344..13294
-----------------
DNA (951bp)
protein (317aa)
Orotidine 5''-phosphate decarboxylase, orotidine-5'-phosphate decarboxylase {ECO:0000313|EMBL:KKR06826.1}; EC=4.1.1.23 {ECO:0000313|EMBL:KKR06826.1};; TaxID=1619062 species="Bacteria; Peregrinibacteri
UPI0001E3053E related cluster n=1 Tax=unknown RepID=UPI0001E3053E rbh
orotidine 5''-phosphate decarboxylase
seg (db=Seg db_id=seg from=289 to=307)
gwc2_scaffold_137_15
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

13331..15526
-----------------
DNA (2196bp)
protein (732aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR06827.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
gwc2_scaffold_137_16
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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comp(15530..16372)
-----------------
DNA (843bp)
protein (281aa)
dimethyladenosine transferase (EC:2.1.1.48)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TRT7_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:KKR06828.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
RRNA_A_DIMETH (db=PatternScan db_id=PS01131 from=52 to=79 evalue=0.0 interpro_id=IPR020596 interpro_description=Ribosomal RNA adenine methylase transferase, conserved site GO=Biological Process: rRNA modification (GO:0000154), Molecular Function: rRNA (adenine-N6,N6-)-dimethyltransferase activity (GO:0000179), Molecular Function: rRNA methyltransferase activity (GO:0008649))
gwc2_scaffold_137_17
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(16369..16617)
-----------------
DNA (249bp)
protein (83aa)
UPF0235 protein VDG1235_2232 n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQM1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKR06829.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
(db=HMMPfam db_id=PF02594 from=10 to=80 evalue=1.2e-21 interpro_id=IPR003746 interpro_description=Protein of unknown function DUF167)
gwc2_scaffold_137_18
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(16601..19354)
-----------------
DNA (2754bp)
protein (918aa)
cation-transporting ATPase A (EC:3.6.3.10)
Cation-transporting ATPase A, P type (ATPase, E1-E2 type) n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D0K5_HALOH rbh
Cation-transporting ATPase A, P type (ATPase, E1-E2 type) Tax=zPERA2_38_36
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=72)
gwc2_scaffold_137_19
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(19360..20004)
-----------------
DNA (645bp)
protein (215aa)
tRNA (Guanine-n(1)-)-methyltransferase, tRNA (Guanine37-N1)-methyltransferase {ECO:0000313|EMBL:KKR06831.1}; EC=2.1.1.228 {ECO:0000313|EMBL:KKR06831.1};; TaxID=1619062 species="Bacteria; Peregrinibact
trmD; transfer RNA (guanine-N(1)-)-methyltransferase(M1G-methyltransferase) (tRNA [GM37] methyltransferase) (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=9 Tax=Clostridium difficile RepID=TRMD_CLOD6
seg (db=Seg db_id=seg from=22 to=33)
gwc2_scaffold_137_20
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(20014..20952)
-----------------
DNA (939bp)
protein (313aa)
Epidermal growth factor receptor n=1 Tax=Cystobacter fuscus DSM 2262 RepID=L9K3K7_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KKR06832.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
gwc2_scaffold_137_21
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(21094..21750)
-----------------
DNA (657bp)
protein (219aa)
Tax=zPERA2_38_36
gwc2_scaffold_137_22
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

22027..24105
-----------------
DNA (2079bp)
protein (693aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR06834.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=13 to=29)
coiled-coil (db=Coil db_id=coil from=218 to=239 evalue=NA)
gwc2_scaffold_137_23
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists


comp(24238..24744)
-----------------
DNA (507bp)
protein (169aa)
30S ribosomal protein S9 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3741A
30S ribosomal protein S9, small subunit ribosomal protein S9 {ECO:0000313|EMBL:KKR06835.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.
SSU ribosomal protein S9P
RIBOSOMAL_S9 (db=PatternScan db_id=PS00360 from=107 to=125 evalue=0.0 interpro_id=IPR020574 interpro_description=Ribosomal protein S9, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwc2_scaffold_137_24
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists


comp(24748..25194)
-----------------
DNA (447bp)
protein (149aa)
50S ribosomal protein L13 n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NBV6_DESAR
50S ribosomal protein L13 {ECO:0000313|EMBL:KKQ71935.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
50S ribosomal protein L13
Ribosomal protein, L13p/L13Aa/L16e/organellar L13 types (db=HMMPIR db_id=PIRSF002181 from=6 to=148 evalue=1.2e-40 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwc2_scaffold_137_25
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists


comp(25197..25550)
-----------------
DNA (354bp)
protein (118aa)
50S ribosomal protein L17 n=4 Tax=Wolbachia RepID=RL17_WOLPP
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=PER_GWF2_38_29
rplQ; ribosomal protein L17
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413:SF3 from=1 to=117 evalue=1.5e-22)
gwc2_scaffold_137_26
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(25590..26564)
-----------------
DNA (975bp)
protein (325aa)
DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit alpha {ECO:0000313|EMBL:KKR06838.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KKR06838.1};; TaxID=1619062 species="Bacteria; Peregrin
DNA-directed RNA polymerase subunit alpha n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=RPOA_SYMTH
DNA-directed RNA polymerase subunit alpha
coiled-coil (db=Coil db_id=coil from=304 to=325 evalue=NA)
gwc2_scaffold_137_27
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists


comp(26608..27240)
-----------------
DNA (633bp)
protein (211aa)
30S ribosomal protein S4 n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RZN9_THEOJ
30S ribosomal protein S4, small subunit ribosomal protein S4 {ECO:0000313|EMBL:KKR06839.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.
30S ribosomal protein S4
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=100 to=124 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
gwc2_scaffold_137_28
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists


comp(27338..27805)
-----------------
DNA (468bp)
protein (156aa)
30S ribosomal protein S11 n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=RS11_THERP
30S ribosomal protein S11, small subunit ribosomal protein S11 {ECO:0000313|EMBL:KKR06840.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_1
rpsK; 30S ribosomal protein S11
seg (db=Seg db_id=seg from=1 to=38)
gwc2_scaffold_137_29
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists


comp(27855..28226)
-----------------
DNA (372bp)
protein (124aa)
30S ribosomal protein S13 n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EBL1_THECK
30S ribosomal protein S13 {ECO:0000313|EMBL:KKQ71940.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
30S ribosomal protein S13
RIBOSOMAL_S13_1 (db=PatternScan db_id=PS00646 from=86 to=99 evalue=0.0 interpro_id=IPR018269 interpro_description=Ribosomal protein S13, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwc2_scaffold_137_30
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(28439..28678)
-----------------
DNA (240bp)
protein (80aa)
Translation initiation factor IF-1 n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3P915_DEFDS
Translation initiation factor IF-1, translation initiation factor IF-1 {ECO:0000313|EMBL:KKR06842.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_G
infA; translation initiation factor IF-1
(db=HMMPfam db_id=PF01176 from=6 to=77 evalue=1.0e-17 interpro_id=IPR006196 interpro_description=RNA-binding domain, S1, IF1 type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
Displaying items 1-30 of 106 in total

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