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gwc2_scaffold_77

Alias: GWC2_PER_33_13_2

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Displaying items 1-30 of 176 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWC2_PER_33_13_2_1
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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3..314
-----------------
DNA (312bp)
protein (104aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40967.1}; Flags: Fragment;; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
GWC2_PER_33_13_2_2
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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445..642
-----------------
DNA (198bp)
protein (66aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40968.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
coiled-coil (db=Coil db_id=coil from=28 to=63 evalue=NA)
GWC2_PER_33_13_2_3
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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626..1126
-----------------
DNA (501bp)
protein (167aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40969.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
coiled-coil (db=Coil db_id=coil from=45 to=66 evalue=NA)
seg (db=Seg db_id=seg from=39 to=61)
GWC2_PER_33_13_2_4
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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1479..1688
-----------------
DNA (210bp)
protein (70aa)
Band 7 protein n=1 Tax=Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC 16016 / NCTC 11634 / CL345/78) RepID=F0P0Y2_WEEVC
Uncharacterized protein {ECO:0000313|EMBL:KKP40970.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
coiled-coil (db=Coil db_id=coil from=13 to=34 evalue=NA)
GWC2_PER_33_13_2_5
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(1707..2381)
-----------------
DNA (675bp)
protein (225aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40971.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
seg (db=Seg db_id=seg from=53 to=66)
transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=78)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=48 to=71 evalue=1.6e-05 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
GWC2_PER_33_13_2_6
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(2444..3385)
-----------------
DNA (942bp)
protein (314aa)
UDP-N-acetylenolpyruvoylglucosamine reductase, UDP-N-acetylmuramate dehydrogenase {ECO:0000313|EMBL:KKP40972.1}; EC=1.3.1.98 {ECO:0000313|EMBL:KKP40972.1};; TaxID=1619061 species="Bacteria; Peregrinib
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) RepID=E4TIT8_CALNY
coiled-coil (db=Coil db_id=coil from=188 to=216 evalue=NA)
GWC2_PER_33_13_2_7
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(3457..5460)
-----------------
DNA (2004bp)
protein (668aa)
MAEBL, putative (Fragment) n=1 Tax=Plasmodium berghei (strain Anka) RepID=Q4YV31_PLABA
Uncharacterized protein {ECO:0000313|EMBL:KKP40973.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
coiled-coil (db=Coil db_id=coil from=270 to=291 evalue=NA)
GWC2_PER_33_13_2_8
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(5460..5984)
-----------------
DNA (525bp)
protein (175aa)
RNA polymerase sigma-70 factor, ECF subfamily protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JN21_9BACT
RNA polymerase sigma factor {ECO:0000313|EMBL:KKP36372.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
RNA polymerase ECF-type sigma factor
coiled-coil (db=Coil db_id=coil from=106 to=127 evalue=NA)
GWC2_PER_33_13_2_9
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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6140..7252
-----------------
DNA (1113bp)
protein (371aa)
Similar to mannosyltransferase B n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1X2_9BACT
Group 1 glycosyl transferase {ECO:0000313|EMBL:KKP40975.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
group 1 glycosyl transferase
seg (db=Seg db_id=seg from=135 to=143)
GWC2_PER_33_13_2_10
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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7267..7578
-----------------
DNA (312bp)
protein (104aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP36370.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
(db=HMMPfam db_id=PF05258 from=5 to=96 evalue=9.9e-13 interpro_id=IPR007922 interpro_description=Protein of unknown function DUF721/UPF0232)
GWC2_PER_33_13_2_11
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(7575..8159)
-----------------
DNA (585bp)
protein (195aa)
Beta-lactamase domain protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PXR1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KKP36369.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
Beta-lactamase domain protein
no description (db=Gene3D db_id=G3DSA:3.60.15.10 from=3 to=194 evalue=1.7e-42)
GWC2_PER_33_13_2_12
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(8173..8976)
-----------------
DNA (804bp)
protein (268aa)
Prolipoprotein diacylglyceryl transferase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XTZ5_9BACT
Prolipoprotein diacylglyceryl transferase {ECO:0000313|EMBL:KKP36368.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
prolipoprotein diacylglyceryl transferase
seg (db=Seg db_id=seg from=24 to=36)
GWC2_PER_33_13_2_13
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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9139..10047
-----------------
DNA (909bp)
protein (303aa)
Uncharacterized protein n=1 Tax=Sulfurovum sp. AR RepID=I2K9U8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KKP36367.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
hypothetical protein
seg (db=Seg db_id=seg from=77 to=90)
GWC2_PER_33_13_2_14
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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10131..10487
-----------------
DNA (357bp)
protein (119aa)
id=5090609 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
GWC2_PER_33_13_2_15
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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10558..11091
-----------------
DNA (534bp)
protein (178aa)
hypothetical protein PpisJ2_02993 n=2 Tax=Pseudoalteromonas RepID=UPI00026CF072
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
(db=HMMPfam db_id=PF09391 from=45 to=176 evalue=7.5e-34 interpro_id=IPR018988 interpro_description=Protein of unknown function DUF2000)
GWC2_PER_33_13_2_16
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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11103..11354
-----------------
DNA (252bp)
protein (84aa)
Uncharacterized protein n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2IZ35_NOSP7
hypothetical protein; K15383 MtN3 and saliva related transmembrane protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
seg (db=Seg db_id=seg from=37 to=56)
GWC2_PER_33_13_2_17
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(11503..12750)
-----------------
DNA (1248bp)
protein (416aa)
ABC transporter-like protein; K05685 macrolide transport system ATP-binding/permease protein [EC:3.6.3.-] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
Uncharacterized protein n=5 Tax=Pelosinus fermentans RepID=I8RYS4_9FIRM
MacB-like periplasmic core domain containing protein
seg (db=Seg db_id=seg from=24 to=37)
GWC2_PER_33_13_2_18
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(12857..14098)
-----------------
DNA (1242bp)
protein (414aa)
Putative ABC transporter permease protein n=1 Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GSU3_SELRL rbh
ABC transporter permease; K02004 putative ABC transport system permease protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
ABC transporter permease
seg (db=Seg db_id=seg from=27 to=42)
GWC2_PER_33_13_2_19
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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14230..14913
-----------------
DNA (684bp)
protein (228aa)
DNA repair protein radc n=1 Tax=Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) RepID=H2J3A1_MARPK
Repair protein radc protein {ECO:0000313|EMBL:KKP36361.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
DNA repair protein radc
UPF0758 (db=PatternScan db_id=PS01302 from=175 to=180 evalue=0.0 interpro_id=IPR020891 interpro_description=Uncharacterised protein family UPF0758, conserved site)
GWC2_PER_33_13_2_20
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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14925..15224
-----------------
DNA (300bp)
protein (100aa)
id=5090615 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
GWC2_PER_33_13_2_21
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(15426..16121)
-----------------
DNA (696bp)
protein (232aa)
ABC-type transporter ATP-binding protein, lipoprotein-releasing system ATP-binding protein {ECO:0000313|EMBL:KKP40987.1}; EC=3.6.3.- {ECO:0000313|EMBL:KKP40987.1};; TaxID=1619061 species="Bacteria; Pe
ABC transporter related n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNY2_9FIRM
ABC-type transporter ATP-binding protein
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=149 to=163 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
GWC2_PER_33_13_2_22
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(16193..18253)
-----------------
DNA (2061bp)
protein (687aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=uncultured organism RepID=M1Q2B1_9ZZZZ
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:KKP36358.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
RND family efflux transporter MFP subunit
coiled-coil (db=Coil db_id=coil from=129 to=150 evalue=NA)
GWC2_PER_33_13_2_23
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

18408..18872
-----------------
DNA (465bp)
protein (155aa)
cytidine deaminase (EC:3.5.4.5); K01489 cytidine deaminase [EC:3.5.4.5] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LVI9_CLOCD
CYT_DCMP_DEAMINASES (db=PatternScan db_id=PS00903 from=63 to=108 evalue=0.0 interpro_id=IPR016192 interpro_description=APOBEC/CMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
GWC2_PER_33_13_2_24
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(18879..19964)
-----------------
DNA (1086bp)
protein (362aa)
Chorismate synthase n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FXK3_ECHVK rbh
chorismate synthase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
chorismate synthase
CHORISMATE_SYNTHASE_1 (db=PatternScan db_id=PS00787 from=16 to=31 evalue=0.0 interpro_id=IPR020541 interpro_description=Chorismate synthase, conserved site GO=Molecular Function: chorismate synthase activity (GO:0004107), Biological Process: aromatic amino acid family biosynthetic process (GO:0009073))
GWC2_PER_33_13_2_25
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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20166..20510
-----------------
DNA (345bp)
protein (115aa)
Predicted protein n=1 Tax=Nectria haematococca (strain 77-13-4 / ATCC MYA-4622 / FGSC 9596 / MPVI) RepID=C7Z2E7_NECH7
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
seg (db=Seg db_id=seg from=10 to=25)
GWC2_PER_33_13_2_26
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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20597..20923
-----------------
DNA (327bp)
protein (109aa)
30S ribosomal protein S16 n=1 Tax=Helcococcus kunzii ATCC 51366 RepID=H3NNG4_9FIRM
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
30S ribosomal protein S16
seg (db=Seg db_id=seg from=89 to=108)
GWC2_PER_33_13_2_27
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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21010..21306
-----------------
DNA (297bp)
protein (99aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PG06_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KKP40993.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
RNA-binding protein
seg (db=Seg db_id=seg from=85 to=98)
GWC2_PER_33_13_2_28
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

21338..21703
-----------------
DNA (366bp)
protein (122aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=25 to=48)
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
GWC2_PER_33_13_2_29
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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21792..22967
-----------------
DNA (1176bp)
protein (392aa)
Integral membrane protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TPA4_METAC
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
seg (db=Seg db_id=seg from=9 to=24)
GWC2_PER_33_13_2_30
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(22970..23425)
-----------------
DNA (456bp)
protein (152aa)
Adenylate/guanylate cyclase n=1 Tax=Beggiatoa sp. PS RepID=A7BVW4_9GAMM
putative phosphate regulon DNA-binding response regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_cur
PAS/PAC sensor hybrid histidine kinase
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=7 to=146 evalue=1.7e-15)
Displaying items 1-30 of 176 in total

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