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gwc2_scaffold_151

Alias: GWC2_PER_33_13_4

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Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWC2_PER_33_13_4_1
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(4..561)
-----------------
DNA (558bp)
protein (186aa)
50S ribosomal protein L5 n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=RL5_DESAA
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
50S ribosomal protein L5
Ribosomal protein, L5p/L5a/L11e/organellar L5 types (db=HMMPIR db_id=PIRSF002161 from=1 to=183 evalue=1.0e-55 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
GWC2_PER_33_13_4_2
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(600..947)
-----------------
DNA (348bp)
protein (116aa)
50S ribosomal protein L24 n=3 Tax=Desulfovibrio RepID=M1WL12_DESPC
50S ribosomal protein L24 {ECO:0000313|EMBL:KKP37696.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
50S ribosomal protein L24
seg (db=Seg db_id=seg from=88 to=99)
GWC2_PER_33_13_4_3
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(965..1333)
-----------------
DNA (369bp)
protein (123aa)
50S ribosomal protein L14 n=2 Tax=Saprospira grandis RepID=H6L0N3_SAPGL
50S ribosomal protein L14 {ECO:0000313|EMBL:KKP37697.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
rplN; 50S ribosomal protein L14
seg (db=Seg db_id=seg from=51 to=67)
GWC2_PER_33_13_4_4
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(1365..1598)
-----------------
DNA (234bp)
protein (78aa)
30S ribosomal protein S17 n=5 Tax=Coriobacteriaceae RepID=C8WJK3_EGGLE
30S ribosomal protein S17, small subunit ribosomal protein S17 {ECO:0000313|EMBL:KKP40746.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_1
RpsQ; 30S ribosomal protein S17
RIBOSOMALS17 (db=FPrintScan db_id=PR00973 from=20 to=43 evalue=1.4e-07 interpro_id=IPR000266 interpro_description=Ribosomal protein S17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
GWC2_PER_33_13_4_5
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists


comp(1643..1843)
-----------------
DNA (201bp)
protein (67aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
coiled-coil (db=Coil db_id=coil from=12 to=33 evalue=NA)
L29: ribosomal protein L29 (db=HMMTigr db_id=TIGR00012 from=6 to=61 evalue=0.00016 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
(db=HMMPfam db_id=PF00831 from=4 to=60 evalue=2.2e-09 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
GWC2_PER_33_13_4_6
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists


comp(1856..2275)
-----------------
DNA (420bp)
protein (140aa)
50S ribosomal protein L16 n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3P930_DEFDS
50S ribosomal protein L16, large subunit ribosomal protein L16 {ECO:0000313|EMBL:KKP40748.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_1
rplP; 50S ribosomal protein L16
no description (db=Gene3D db_id=G3DSA:3.90.1170.10 from=33 to=137 evalue=0.00044)
GWC2_PER_33_13_4_7
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists


comp(2300..2974)
-----------------
DNA (675bp)
protein (225aa)
30S ribosomal protein S3 n=6 Tax=Clostridium thermocellum RepID=RS3_CLOTH
30S ribosomal protein S3 {ECO:0000313|EMBL:KKP37701.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
30S ribosomal protein S3P
seg (db=Seg db_id=seg from=60 to=71)
GWC2_PER_33_13_4_8
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists


comp(3017..3424)
-----------------
DNA (408bp)
protein (136aa)
LSU ribosomal protein L22p (L17e) n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CFE2_9CLOT
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
rplV; LSU ribosomal protein L22P
seg (db=Seg db_id=seg from=37 to=59)
GWC2_PER_33_13_4_9
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists


comp(3445..3729)
-----------------
DNA (285bp)
protein (95aa)
30S ribosomal protein S19 n=2 Tax=Fervidobacterium RepID=RS19_FERNB
30S ribosomal protein S19, small subunit ribosomal protein S19 {ECO:0000313|EMBL:KKP40751.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_1
30S ribosomal protein S19
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
GWC2_PER_33_13_4_10
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists


comp(3755..4603)
-----------------
DNA (849bp)
protein (283aa)
50S ribosomal protein L2 n=1 Tax=Caloramator australicus RC3 RepID=I7KTZ0_9CLOT rbh
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
50S ribosomal protein L2
seg (db=Seg db_id=seg from=231 to=247)
GWC2_PER_33_13_4_11
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists


comp(4625..4921)
-----------------
DNA (297bp)
protein (99aa)
50S ribosomal protein L23 n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=RL23_CARHZ
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
rplW; 50S ribosomal protein L23
seg (db=Seg db_id=seg from=78 to=91)
GWC2_PER_33_13_4_12
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists


comp(4947..5591)
-----------------
DNA (645bp)
protein (215aa)
50S ribosomal protein L4 n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A2Y4_MAHA5
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
50S ribosomal protein L4
seg (db=Seg db_id=seg from=134 to=144)
GWC2_PER_33_13_4_13
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists


comp(5591..6229)
-----------------
DNA (639bp)
protein (213aa)
50S ribosomal protein L3 n=5 Tax=Coriobacteriaceae RepID=C8WP45_EGGLE
50S ribosomal protein L3, large subunit ribosomal protein L3 {ECO:0000313|EMBL:KKP40755.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.
50S ribosomal protein L3
seg (db=Seg db_id=seg from=73 to=89)
GWC2_PER_33_13_4_14
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists


comp(6330..6662)
-----------------
DNA (333bp)
protein (111aa)
30S ribosomal protein S10 n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZL3_CALAS
30S ribosomal protein S10 {ECO:0000313|EMBL:KKP37708.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
rpsJ; 30S ribosomal protein S10
RIBOSOMAL_S10 (db=PatternScan db_id=PS00361 from=34 to=49 evalue=0.0 interpro_id=IPR018268 interpro_description=Ribosomal protein S10, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
GWC2_PER_33_13_4_15
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(6755..7951)
-----------------
DNA (1197bp)
protein (399aa)
Elongation factor Tu n=1 Tax=Nitratiruptor sp. (strain SB155-2) RepID=EFTU_NITSB rbh
Elongation factor Tu {ECO:0000313|EMBL:KKP37709.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
tufA; elongation factor Tu
EFACTOR_GTP (db=PatternScan db_id=PS00301 from=55 to=70 evalue=0.0 interpro_id=IPR000795 interpro_description=Protein synthesis factor, GTP-binding GO=Molecular Function: GTPase activity (GO:0003924), Molecular Function: GTP binding (GO:0005525))
GWC2_PER_33_13_4_16
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(8108..10204)
-----------------
DNA (2097bp)
protein (699aa)
Elongation factor G n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W708_DESIS rbh
Elongation factor G {ECO:0000313|EMBL:KKP37710.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
translation elongation factor G
EFACTOR_GTP (db=PatternScan db_id=PS00301 from=49 to=64 evalue=0.0 interpro_id=IPR000795 interpro_description=Protein synthesis factor, GTP-binding GO=Molecular Function: GTPase activity (GO:0003924), Molecular Function: GTP binding (GO:0005525))
GWC2_PER_33_13_4_17
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(10433..12202)
-----------------
DNA (1770bp)
protein (590aa)
Xenobiotic-transporting ATPase n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3J010_9GAMM rbh
Xenobiotic-transporting ATPase {ECO:0000313|EMBL:KKP37711.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
hypothetical protein
seg (db=Seg db_id=seg from=2 to=12)
GWC2_PER_33_13_4_18
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(12331..12636)
-----------------
DNA (306bp)
protein (102aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP40760.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
coiled-coil (db=Coil db_id=coil from=28 to=49 evalue=NA)
GWC2_PER_33_13_4_19
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists


comp(12647..13105)
-----------------
DNA (459bp)
protein (153aa)
30S ribosomal protein S7 n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8AA33_THEID
30S ribosomal protein S7 {ECO:0000313|EMBL:KKP37713.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
30S ribosomal protein S7
coiled-coil (db=Coil db_id=coil from=116 to=137 evalue=NA)
GWC2_PER_33_13_4_20
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists


comp(13151..13570)
-----------------
DNA (420bp)
protein (140aa)
30S ribosomal protein S12 n=10 Tax=Clostridium RepID=RS12_CLOTH
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
rpsL; ribosomal protein S12
RIBOSOMAL_S12 (db=PatternScan db_id=PS00055 from=56 to=63 evalue=0.0 interpro_id=IPR006032 interpro_description=Ribosomal protein S12/S23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
GWC2_PER_33_13_4_21
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(13648..17502)
-----------------
DNA (3855bp)
protein (1285aa)
rpoC; DNA-directed RNA polymerase subunit beta; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
DNA-directed RNA polymerase subunit beta' n=8 Tax=Dehalococcoides mccartyi RepID=RPOC_DEHSC rbh
DNA-directed RNA polymerase subunit beta'
coiled-coil (db=Coil db_id=coil from=150 to=171 evalue=NA)
GWC2_PER_33_13_4_22
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(17663..18154)
-----------------
DNA (492bp)
protein (164aa)
Single-stranded DNA-binding protein n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MY37_ANATU
Single-strand DNA-binding protein, single-strand DNA-binding protein {ECO:0000313|EMBL:KKP40764.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC
hypothetical protein
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=2 to=117 evalue=1.0e-35 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
GWC2_PER_33_13_4_23
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(18185..21808)
-----------------
DNA (3624bp)
protein (1208aa)
DNA-directed RNA polymerase subunit beta n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EER4_9CHLR rbh
DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:KKP37717.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
DNA-directed RNA polymerase subunit beta
seg (db=Seg db_id=seg from=826 to=838)
GWC2_PER_33_13_4_24
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(21997..23253)
-----------------
DNA (1257bp)
protein (419aa)
Predicted ABC transporter, permease component n=2 Tax=Clostridium kluyveri RepID=A5N8R9_CLOK5
Putative ABC transporter, permease component {ECO:0000313|EMBL:KKP37718.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
ABC-type transport system, involved in lipoprotein release, permease component
seg (db=Seg db_id=seg from=16 to=36)
GWC2_PER_33_13_4_25
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(23285..23878)
-----------------
DNA (594bp)
protein (198aa)
ABC transporter ATP-binding protein n=2 Tax=Geobacillus RepID=A4IK61_GEOTN
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKP40767.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
ABC transporter ATP-binding protein
coiled-coil (db=Coil db_id=coil from=177 to=198 evalue=NA)
GWC2_PER_33_13_4_26
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(23953..24699)
-----------------
DNA (747bp)
protein (249aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP37720.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
no description (db=Gene3D db_id=G3DSA:3.20.20.150 from=1 to=247 evalue=1.9e-12 interpro_id=IPR013022 interpro_description=Xylose isomerase-like, TIM barrel domain)
Xylose isomerase-like (db=superfamily db_id=SSF51658 from=4 to=245 evalue=2.2e-21 interpro_id=IPR013022 interpro_description=Xylose isomerase-like, TIM barrel domain)
(db=HMMPfam db_id=PF01261 from=18 to=183 evalue=4.8e-08 interpro_id=IPR012307 interpro_description=Xylose isomerase, TIM barrel domain)
GWC2_PER_33_13_4_27
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(24773..26050)
-----------------
DNA (1278bp)
protein (426aa)
Seryl-tRNA synthetase, seryl-tRNA synthetase {ECO:0000313|EMBL:KKP40769.1}; EC=6.1.1.11 {ECO:0000313|EMBL:KKP40769.1};; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CEW0_DESTA rbh
coiled-coil (db=Coil db_id=coil from=31 to=66 evalue=NA)
GWC2_PER_33_13_4_28
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(26116..26508)
-----------------
DNA (393bp)
protein (131aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP37722.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
coiled-coil (db=Coil db_id=coil from=90 to=111 evalue=NA)
seg (db=Seg db_id=seg from=24 to=35)
yfiA: ribosomal subunit interface protein (db=HMMTigr db_id=TIGR00741 from=3 to=107 evalue=3.0e-06 interpro_id=IPR003489 interpro_description=Ribosomal protein S30Ae/sigma 54 modulation protein GO=Molecular Function: binding (GO:0005488), Biological Process: primary metabolic process (GO:0044238))
GWC2_PER_33_13_4_29
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(26569..27840)
-----------------
DNA (1272bp)
protein (424aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP37723.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
coiled-coil (db=Coil db_id=coil from=292 to=313 evalue=NA)
seg (db=Seg db_id=seg from=91 to=106)
GWC2_PER_33_13_4_30
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

27951..28598
-----------------
DNA (648bp)
protein (216aa)
trmD; tRNA (guanine-n(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
trmD; tRNA (guanine-N(1)-)-methyltransferase TrmD (EC:2.1.1.228)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FZ74_9FIRM
seg (db=Seg db_id=seg from=21 to=38)
Displaying items 1-30 of 86 in total

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