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gwc2_scaffold_265

Alias: GWC2_PER_33_13_6

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Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWC2_PER_33_13_6_1
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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193..534
-----------------
DNA (342bp)
protein (114aa)
id=5091109 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
GWC2_PER_33_13_6_2
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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597..1208
-----------------
DNA (612bp)
protein (204aa)
Xanthosine triphosphate pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
Non-canonical purine NTP pyrophosphatase n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AM50_IGNAJ
Xanthosine triphosphate pyrophosphatase
ITPase-like (db=superfamily db_id=SSF52972 from=1 to=199 evalue=1.3e-39)
GWC2_PER_33_13_6_3
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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1201..2607
-----------------
DNA (1407bp)
protein (469aa)
Membrane protein n=2 Tax=Clostridium RepID=A0PZR7_CLONN
O-antigen polymerase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
O-antigen polymerase
transmembrane_regions (db=TMHMM db_id=tmhmm from=25 to=47)
GWC2_PER_33_13_6_4
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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2682..5564
-----------------
DNA (2883bp)
protein (961aa)
Phosphoenolpyruvate synthase n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MCF7_9EURY
phosphoenolpyruvate synthase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
phosphoenolpyruvate synthase
coiled-coil (db=Coil db_id=coil from=69 to=93 evalue=NA)
GWC2_PER_33_13_6_5
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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6029..6298
-----------------
DNA (270bp)
protein (90aa)
Uncharacterized protein n=5 Tax=Peptostreptococcus magnus RepID=B0S0M7_FINM2
Copper-sensing transcriptional repressor CsoR family protein {ECO:0000313|EMBL:KKP36413.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.
hypothetical protein
(db=HMMPfam db_id=PF02583 from=10 to=84 evalue=4.0e-15 interpro_id=IPR003735 interpro_description=Protein of unknown function DUF156)
GWC2_PER_33_13_6_6
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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6300..8594
-----------------
DNA (2295bp)
protein (765aa)
ATPase, E1-E2 type:Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YT77_9CHLB rbh
ATPase, E1-E2 type:Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:KKP36412.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibact
copper-transporting ATPase
transmembrane_regions (db=TMHMM db_id=tmhmm from=107 to=129)
GWC2_PER_33_13_6_7
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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8598..9626
-----------------
DNA (1029bp)
protein (343aa)
Heavy metal transport/detoxification protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KJ73_CLOPH
heavy metal transport/detoxification protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=88 to=110)
GWC2_PER_33_13_6_8
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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9637..10026
-----------------
DNA (390bp)
protein (130aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
GWC2_PER_33_13_6_9
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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10076..12280
-----------------
DNA (2205bp)
protein (735aa)
pcrA; ATP-dependent DNA helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
ATP-dependent DNA helicase n=1 Tax=Gracilibacillus halophilus YIM-C55.5 RepID=N4W917_9BACI rbh
pcrA; ATP-dependent DNA helicase
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=658 evalue=1.2e-171)
GWC2_PER_33_13_6_10
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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12286..13110
-----------------
DNA (825bp)
protein (275aa)
Uncharacterized protein n=2 Tax=Dehalobacter RepID=K4KQP5_9FIRM
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
metallophosphoesterase
no description (db=Gene3D db_id=G3DSA:3.60.21.30 from=1 to=262 evalue=1.3e-83)
GWC2_PER_33_13_6_11
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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13164..14411
-----------------
DNA (1248bp)
protein (416aa)
ctpA; carboxy-terminal-processing protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
ctpA; carboxy-terminal-processing protease (EC:3.4.21.102)
Carboxyl-terminal protease n=1 Tax=sediment metagenome RepID=D9PIM3_9ZZZZ
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
GWC2_PER_33_13_6_12
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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14459..14692
-----------------
DNA (234bp)
protein (78aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
coiled-coil (db=Coil db_id=coil from=7 to=28 evalue=NA)
GWC2_PER_33_13_6_13
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(14660..16549)
-----------------
DNA (1890bp)
protein (630aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP36405.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=75 to=110)
GWC2_PER_33_13_6_14
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(16914..17051)
-----------------
DNA (138bp)
protein (46aa)
id=5091122 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
GWC2_PER_33_13_6_15
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(17156..20389)
-----------------
DNA (3234bp)
protein (1078aa)
Transcription-repair coupling factor n=6 Tax=Pelosinus fermentans RepID=I8RUU3_9FIRM rbh
Transcription-repair coupling factor {ECO:0000313|EMBL:KKP36403.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
transcription-repair coupling factor
DEAD BOX ATP-DEPENDENT RNA HELICASE (db=HMMPanther db_id=PTHR10967 from=472 to=1060 evalue=0.00091)
GWC2_PER_33_13_6_16
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(20509..21618)
-----------------
DNA (1110bp)
protein (370aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CG53_THET1
Polymerase III subunit beta protein {ECO:0000313|EMBL:KKP36402.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
seg (db=Seg db_id=seg from=97 to=112)
GWC2_PER_33_13_6_17
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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22273..22437
-----------------
DNA (165bp)
protein (55aa)
id=5091125 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
GWC2_PER_33_13_6_18
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(22383..24164)
-----------------
DNA (1782bp)
protein (594aa)
Beta-lactamase domain protein n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A3B3_NATTJ rbh
Beta-lactamase domain protein {ECO:0000313|EMBL:KKP36400.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
beta-lactamase
UPF0036 (db=PatternScan db_id=PS01292 from=402 to=430 evalue=0.0 interpro_id=IPR001587 interpro_description=Ribonuclease J, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788), Molecular Function: metal ion binding (GO:0046872))
GWC2_PER_33_13_6_19
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(24238..24588)
-----------------
DNA (351bp)
protein (117aa)
50S ribosomal protein L20 n=2 Tax=Alcaligenes RepID=J0B948_ALCFA
50S ribosomal protein L20 {ECO:0000313|EMBL:KKP36399.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
rplT; 50S ribosomal protein L20
RIBOSOMAL_L20 (db=PatternScan db_id=PS00937 from=54 to=70 evalue=0.0 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
GWC2_PER_33_13_6_20
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists


comp(24621..24812)
-----------------
DNA (192bp)
protein (64aa)
L35p-like Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
RIBOSOMAL_L35 (db=PatternScan db_id=PS00936 from=4 to=29 evalue=0.0 interpro_id=IPR018265 interpro_description=Ribosomal protein L35, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
seg (db=Seg db_id=seg from=33 to=44)
(db=HMMPfam db_id=PF01632 from=2 to=60 evalue=2.7e-12 interpro_id=IPR021137 interpro_description=Ribosomal protein L35 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
GWC2_PER_33_13_6_21
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(24834..25337)
-----------------
DNA (504bp)
protein (168aa)
Translation initiation factor IF-3 n=3 Tax=Clostridium butyricum RepID=C4IIX7_CLOBU
translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
translation initiation factor IF-3
seg (db=Seg db_id=seg from=20 to=31)
GWC2_PER_33_13_6_22
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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25474..25911
-----------------
DNA (438bp)
protein (146aa)
Endoribonuclease YbeY n=1 Tax=Streptobacillus moniliformis (strain ATCC 14647 / DSM 12112 / NCTC 10651 / 9901) RepID=D1AXI4_STRM9
hypothetical protein; K07042 probable rRNA maturation factor Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
UPF0054 (db=PatternScan db_id=PS01306 from=116 to=126 evalue=0.0 interpro_id=IPR020549 interpro_description=Uncharacterised protein family UPF0054, conserved site GO=Molecular Function: metal ion binding (GO:0046872))
GWC2_PER_33_13_6_23
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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26137..28590
-----------------
DNA (2454bp)
protein (818aa)
thrA; bifunctional aspartokinase I/homoserine dehydrogenase I (EC:2.7.2.4); K12524 bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7
thrA; bifunctional aspartokinase I/homoserine dehydrogenase I (EC:2.7.2.4)
Bifunctional protein: aspartokinase I; homoserine dehydrogenase n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11YZ9_CYTH3 rbh
ASPARTOKINASE (db=PatternScan db_id=PS00324 from=3 to=11 evalue=0.0 interpro_id=IPR018042 interpro_description=Aspartate kinase, conserved site GO=Molecular Function: aspartate kinase activity (GO:0004072), Biological Process: cellular amino acid biosynthetic process (GO:0008652))
GWC2_PER_33_13_6_24
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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28611..29687
-----------------
DNA (1077bp)
protein (359aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0E9K7_THECK rbh
aspartate-semialdehyde dehydrogenase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
coiled-coil (db=Coil db_id=coil from=44 to=65 evalue=NA)
GWC2_PER_33_13_6_25
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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29691..30365
-----------------
DNA (675bp)
protein (225aa)
HAD-like domain Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
HALOACID DEHALOGENASE-LIKE HYDROLASE (db=HMMPanther db_id=PTHR12725 from=61 to=203 evalue=0.00047)
seg (db=Seg db_id=seg from=67 to=80)
HAD-like (db=superfamily db_id=SSF56784 from=1 to=220 evalue=1.1e-16 interpro_id=IPR023214 interpro_description=HAD-like domain)
GWC2_PER_33_13_6_26
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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30378..31298
-----------------
DNA (921bp)
protein (307aa)
Homoserine kinase, homoserine kinase {ECO:0000313|EMBL:KKP40121.1}; EC=2.7.1.39 {ECO:0000313|EMBL:KKP40121.1};; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacteriu
thrB; homoserine kinase (EC:2.7.1.39)
Homoserine kinase n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11YZ8_CYTH3 rbh
GHMP_KINASES_ATP (db=PatternScan db_id=PS00627 from=87 to=98 evalue=0.0 interpro_id=IPR006203 interpro_description=GHMP kinase, ATP-binding, conserved site GO=Molecular Function: ATP binding (GO:0005524))
GWC2_PER_33_13_6_27
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

31308..32636
-----------------
DNA (1329bp)
protein (443aa)
thrC; threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
thrC; threonine synthase (EC:4.2.3.1)
L-threonine synthase n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11YZ7_CYTH3 rbh
DEHYDRATASE_SER_THR (db=PatternScan db_id=PS00165 from=97 to=111 evalue=0.0 interpro_id=IPR000634 interpro_description=Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: pyridoxal phosphate binding (GO:0030170))
GWC2_PER_33_13_6_28
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(32628..32882)
-----------------
DNA (255bp)
protein (85aa)
id=5091136 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
GWC2_PER_33_13_6_29
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

33209..34927
-----------------
DNA (1719bp)
protein (573aa)
ilvD; dihydroxyacid dehydratase phosphogluconate dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
ilvD; Dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Galdieria sulphuraria RepID=M2XUE3_GALSU rbh
ILVD_EDD_2 (db=PatternScan db_id=PS00887 from=480 to=491 evalue=0.0 interpro_id=IPR020558 interpro_description=Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
GWC2_PER_33_13_6_30
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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comp(34917..42509)
-----------------
DNA (7593bp)
protein (2531aa)
Uncharacterized protein n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FIE2_DESAA
Uncharacterized protein {ECO:0000313|EMBL:KKP40125.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Displaying items 1-30 of 48 in total

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