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gwc2_scaffold_436

Alias: GWC2_PER_33_13_10

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWC2_PER_33_13_10_1
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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450..1787
-----------------
DNA (1338bp)
protein (446aa)
Histidyl-tRNA synthetase, histidyl-tRNA synthetase {ECO:0000313|EMBL:KKP39505.1}; EC=6.1.1.21 {ECO:0000313|EMBL:KKP39505.1};; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibac
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QF58_9CLOT
seg (db=Seg db_id=seg from=2 to=13)
GWC2_PER_33_13_10_2
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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1914..2771
-----------------
DNA (858bp)
protein (286aa)
Heavy-metal-associated, conserved site Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
HMA_1 (db=PatternScan db_id=PS01047 from=231 to=261 evalue=0.0 interpro_id=IPR017969 interpro_description=Heavy-metal-associated, conserved site GO=Biological Process: metal ion transport (GO:0030001), Molecular Function: metal ion binding (GO:0046872))
GWC2_PER_33_13_10_3
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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3080..7513
-----------------
DNA (4434bp)
protein (1478aa)
Putative uncharacterized protein n=5 Tax=Francisella novicida RepID=A0Q7Q2_FRATN
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
coiled-coil (db=Coil db_id=coil from=87 to=108 evalue=NA)
GWC2_PER_33_13_10_4
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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7585..8241
-----------------
DNA (657bp)
protein (219aa)
Plasmid pRiA4b ORF-3 family protein n=1 Tax=Kosmotoga olearia (strain TBF 19.5.1) RepID=C5CHW1_KOSOT
plasmid pRiA4b ORF-3 family protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
plasmid pRiA4b ORF-3 family protein
(db=HMMPfam db_id=PF07929 from=5 to=202 evalue=8.1e-46 interpro_id=IPR012912 interpro_description=Plasmid pRiA4b, Orf3)
GWC2_PER_33_13_10_5
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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8330..8590
-----------------
DNA (261bp)
protein (87aa)
RelB antitoxin n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7E3_NITMU
RelB antitoxin; K07473 DNA-damage-inducible protein J Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
RelB antitoxin
(db=HMMPfam db_id=PF04221 from=3 to=83 evalue=1.9e-11 interpro_id=IPR007337 interpro_description=RelB antitoxin)
GWC2_PER_33_13_10_6
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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8587..8871
-----------------
DNA (285bp)
protein (95aa)
Putative uncharacterized protein n=1 Tax=Moorea producens 3L RepID=F4XWA6_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:KKP36649.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
DNA damage inducible protein
seg (db=Seg db_id=seg from=32 to=45)
GWC2_PER_33_13_10_7
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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9081..9623
-----------------
DNA (543bp)
protein (181aa)
Uncharacterized protein n=6 Tax=Francisella RepID=B0TZW6_FRAP2
hypothetical protein; K07464 putative RecB family exonuclease Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
(db=HMMPfam db_id=PF01930 from=7 to=179 evalue=1.9e-17 interpro_id=IPR022765 interpro_description=Dna2/Cas4, domain of unknown function DUF83)
cas4 Magdalena Stoeva (2/7/14)
GWC2_PER_33_13_10_8
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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9614..10576
-----------------
DNA (963bp)
protein (321aa)
cas1; CRISPR-associated endonuclease Cas1 1 (EC:3.1.-.-)
CRISPR-associated endonuclease Cas1 n=1 Tax=Helcococcus kunzii ATCC 51366 RepID=H3NP36_9FIRM
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
(db=HMMPfam db_id=PF01867 from=28 to=287 evalue=1.8e-46 interpro_id=IPR002729 interpro_description=CRISPR-associated protein Cas1)
GWC2_PER_33_13_10_9
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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10579..10860
-----------------
DNA (282bp)
protein (94aa)
hypothetical protein LinasL1_08501 n=1 Tax=Leptospira inadai serovar Lyme str. 10 RepID=UPI000287DB43
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
cas2; CRISPR-associated endoribonuclease Cas2
TTP0101/SSO1404-like (db=superfamily db_id=SSF143430 from=1 to=82 evalue=5.8e-12)
cas2 Magdalena Stoeva (2/7/14)
GWC2_PER_33_13_10_10
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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12143..13462
-----------------
DNA (1320bp)
protein (440aa)
Cellulosome-anchoring protein n=1 Tax=sediment metagenome RepID=D9PNH4_9ZZZZ
slpA; S-layer protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
slpA; S-layer protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
GWC2_PER_33_13_10_11
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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13730..13933
-----------------
DNA (204bp)
protein (68aa)
PROKAR_LIPOPROTEIN Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=4 to=19)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=17 evalue=6.0)
GWC2_PER_33_13_10_12
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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13960..15117
-----------------
DNA (1158bp)
protein (386aa)
Malate dehydrogenase (Oxaloacetate-decarboxylating) n=1 Tax=Kosmotoga olearia (strain TBF 19.5.1) RepID=C5CE92_KOSOT rbh
Malate dehydrogenase (Oxaloacetate-decarboxylating) {ECO:0000313|EMBL:KKP36655.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
malic enzyme
MALIC_ENZYMES (db=PatternScan db_id=PS00331 from=156 to=172 evalue=0.0 interpro_id=IPR015884 interpro_description=Malic enzyme, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation-reduction process (GO:0055114))
GWC2_PER_33_13_10_13
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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15296..16336
-----------------
DNA (1041bp)
protein (347aa)
hypothetical protein OTW25_00465 n=1 Tax=Ornithinibacillus scapharcae TW25 RepID=UPI000225B26D
S-layer domain-containing protein {ECO:0000313|EMBL:KKP39517.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
s-layer domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
GWC2_PER_33_13_10_14
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(16399..19695)
-----------------
DNA (3297bp)
protein (1099aa)
Glr2377 protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NI07_GLOVI
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
EF_HAND_1 (db=PatternScan db_id=PS00018 from=701 to=713 evalue=0.0 interpro_id=IPR018247 interpro_description=EF-Hand 1, calcium-binding site)
GWC2_PER_33_13_10_15
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(19875..21593)
-----------------
DNA (1719bp)
protein (573aa)
L,D-transpeptidase catalytic domain Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=2 to=13)
(db=HMMPfam db_id=PF03734 from=420 to=546 evalue=8.3e-07 interpro_id=IPR005490 interpro_description=L,D-transpeptidase catalytic domain GO=Molecular Function: transferase activity (GO:0016740))
GWC2_PER_33_13_10_16
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(21625..22584)
-----------------
DNA (960bp)
protein (320aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=30 to=45)
GWC2_PER_33_13_10_17
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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22695..23627
-----------------
DNA (933bp)
protein (311aa)
Mg/Co transporter n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1LVW9_9CLOT
Mg/Co transporter {ECO:0000313|EMBL:KKP36661.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
Mg/Co transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=250 to=272)
GWC2_PER_33_13_10_18
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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23837..24100
-----------------
DNA (264bp)
protein (88aa)
30S ribosomal protein S15 n=1 Tax=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) RepID=RS15_THELT
30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
30S ribosomal protein S15
RIBOSOMAL_S15 (db=PatternScan db_id=PS00362 from=37 to=67 evalue=0.0 interpro_id=IPR000589 interpro_description=Ribosomal protein S15 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
GWC2_PER_33_13_10_19
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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24291..26399
-----------------
DNA (2109bp)
protein (703aa)
Polyribonucleotide nucleotidyltransferase, polyribonucleotide nucleotidyltransferase {ECO:0000313|EMBL:KKP39523.1}; EC=2.7.7.8 {ECO:0000313|EMBL:KKP39523.1};; TaxID=1619061 species="Bacteria; Peregrin
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S3L0_THEOJ rbh
polynuc_phos: polyribonucleotide nucleot (db=HMMTigr db_id=TIGR03591 from=10 to=701 evalue=0.0 interpro_id=IPR012162 interpro_description=Polyribonucleotide nucleotidyltransferase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654), Biological Process: mRNA catabolic process (GO:0006402))
GWC2_PER_33_13_10_20
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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26439..27371
-----------------
DNA (933bp)
protein (311aa)
ABC transporter related protein n=2 Tax=Rhodothermus marinus RepID=D0MJJ6_RHOM4 rbh
ABC transporter; K09687 antibiotic transport system ATP-binding protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
ABC transporter
coiled-coil (db=Coil db_id=coil from=276 to=311 evalue=NA)
GWC2_PER_33_13_10_21
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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27375..28091
-----------------
DNA (717bp)
protein (239aa)
Putative ABC transporter, permease protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F2G7_9DELT
gliding motility protein GldF Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
gliding motility protein GldF
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
GWC2_PER_33_13_10_22
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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28139..29785
-----------------
DNA (1647bp)
protein (549aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=L9KGW2_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KKP36666.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
ABC transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
GWC2_PER_33_13_10_23
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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29805..30371
-----------------
DNA (567bp)
protein (189aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
seg (db=Seg db_id=seg from=9 to=24)
GWC2_PER_33_13_10_24
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

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30383..31234
-----------------
DNA (852bp)
protein (284aa)
Integral membrane protein DUF6 n=1 Tax=Fusobacterium varium ATCC 27725 RepID=C6JIN8_FUSVA
Uncharacterized protein {ECO:0000313|EMBL:KKP39528.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
permeases of the drug/metabolite transporter (DMT) superfamily
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
GWC2_PER_33_13_10_25
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(31235..31402)
-----------------
DNA (168bp)
protein (56aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
seg (db=Seg db_id=seg from=8 to=22)
GWC2_PER_33_13_10_26
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(31711..32592)
-----------------
DNA (882bp)
protein (294aa)
Uncharacterized protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FFV9_FLAJ1
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
hypothetical protein
coiled-coil (db=Coil db_id=coil from=172 to=193 evalue=NA)
GWC2_PER_33_13_10_27
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(32643..33074)
-----------------
DNA (432bp)
protein (144aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
seg (db=Seg db_id=seg from=107 to=119)
GWC2_PER_33_13_10_28
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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comp(33079..34803)
-----------------
DNA (1725bp)
protein (575aa)
Uncharacterized protein n=1 Tax=Piriformospora indica (strain DSM 11827) RepID=G4TBW2_PIRID
Uncharacterized protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
no description (db=Gene3D db_id=G3DSA:3.60.21.10 from=230 to=312 evalue=0.00088)
Metallo-dependent phosphatases (db=superfamily db_id=SSF56300 from=229 to=417 evalue=1.1e-14)
GWC2_PER_33_13_10_29
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

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35056..36762
-----------------
DNA (1707bp)
protein (569aa)
Sulfate transporter n=1 Tax=Bacillus azotoformans LMG 9581 RepID=K6CAZ0_BACAZ rbh
sulfate transporter ychM; K03321 sulfate permease, SulP family Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
sulfate transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=60)
GWC2_PER_33_13_10_30
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

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comp(36775..38565)
-----------------
DNA (1791bp)
protein (597aa)
GTP-binding protein TypA/BipA n=1 Tax=Clostridium colicanis 209318 RepID=N9XPK7_9CLOT rbh
GTP-binding protein lepA {ECO:0000313|EMBL:KKP36674.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
hypothetical protein
TypA_BipA: GTP-binding protein TypA/BipA (db=HMMTigr db_id=TIGR01394 from=3 to=595 evalue=0.0 interpro_id=IPR006298 interpro_description=GTP-binding protein TypA GO=Molecular Function: GTP binding (GO:0005525), Cellular Component: intracellular (GO:0005622))
Displaying items 1-30 of 45 in total

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