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gwf2_scaffold_1157

Alias: PER_GWF2_33_10_4

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_1157_1
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(1..2589)
DNA (2589bp) protein (863aa)
Beta-1,4-xylanase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M263_CLOCD
Beta-1,4-xylanase {ECO:0000313|EMBL:KKP39869.1}; Flags: Fragment;; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
beta-1,4-xylanase
no description (db=Gene3D db_id=G3DSA:2.60.40.1120 from=283 to=361 evalue=0.00049 interpro_id=IPR014766 interpro_description=Carboxypeptidase, regulatory domain GO=Molecular Function: carboxypeptidase activity (GO:0004180))
gwf2_scaffold_1157_2
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(2745..6791)
DNA (4047bp) protein (1349aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP39870.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
seg (db=Seg db_id=seg from=355 to=375)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Starch-binding domain-like (db=superfamily db_id=SSF49452 from=1124 to=1210 evalue=6.8e-09 interpro_id=IPR013784 interpro_description=Carbohydrate-binding-like fold GO=Molecular Function: carbohydrate binding (GO:0030246))
gwf2_scaffold_1157_3
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

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6935..8611
DNA (1677bp) protein (559aa)
uvrD; putative DNA helicase II; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Putative DNA helicase II n=1 Tax=Sulcia muelleri (strain CARI) RepID=E0TJG5_SULMC
uvrD; putative DNA helicase II
seg (db=Seg db_id=seg from=336 to=350)
gwf2_scaffold_1157_4
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(8870..11983)
DNA (3114bp) protein (1038aa)
DNA-dependent ATPase I and helicase II, DNA helicase II / ATP-dependent DNA helicase PcrA {ECO:0000313|EMBL:KKP39872.1}; EC=3.6.1.- {ECO:0000313|EMBL:KKP39872.1};; EC=3.6.4.12 {ECO:0000313|EMBL:KKP398
DNA/RNA helicase, superfamily I n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KXA2_SOLCM rbh
DNA/RNA helicase
seg (db=Seg db_id=seg from=992 to=1007)
gwf2_scaffold_1157_5
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

12171..15317
DNA (3147bp) protein (1049aa)
Uncharacterized protein n=1 Tax=Bergeyella zoohelcum CCUG 30536 RepID=K1M1V9_9FLAO rbh
Type I restriction-modification system methyltransferase subunit {ECO:0000313|EMBL:KKP39873.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33
Type I restriction-modification system methyltransferase subunit
N6_MTASE (db=PatternScan db_id=PS00092 from=443 to=449 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
gwf2_scaffold_1157_6
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(15329..17311)
DNA (1983bp) protein (661aa)
O-antigen polymerase n=1 Tax=Bacillus sp. 1NLA3E RepID=N0AWC2_9BACI
O-antigen polymerase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
O-antigen polymerase
seg (db=Seg db_id=seg from=17 to=32)
gwf2_scaffold_1157_7
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(17424..18818)
DNA (1395bp) protein (465aa)
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (EC:2.7.8.6) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (EC:2.7.8.6)
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EEH5_9CHLR rbh
seg (db=Seg db_id=seg from=13 to=21)
gwf2_scaffold_1157_8
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(18892..19935)
DNA (1044bp) protein (348aa)
Glycosyltransferase, group 2 family protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QNC6_9CLOT
Glycosyl transferase, family 2 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Glycosyl transferase, family 2
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=312 evalue=1.9e-50)
gwf2_scaffold_1157_9
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(20334..21983)
DNA (1650bp) protein (550aa)
Leucine Rich Repeat domain protein n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4W1Z2_9CYAN
internalin-A Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
internalin-A
seg (db=Seg db_id=seg from=274 to=288)
gwf2_scaffold_1157_10
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(22038..23306)
DNA (1269bp) protein (423aa)
AAA ATPase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XPK3_9BACT
putative ATPase (AAA+ superfamily) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
putative ATPase (AAA+ superfamily)
seg (db=Seg db_id=seg from=202 to=217)
gwf2_scaffold_1157_11
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(23373..24500)
DNA (1128bp) protein (376aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=15 to=28)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
gwf2_scaffold_1157_12
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(24604..25767)
DNA (1164bp) protein (388aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=269 to=280)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
gwf2_scaffold_1157_13
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(25791..27419)
DNA (1629bp) protein (543aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=36 to=47)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=30)
gwf2_scaffold_1157_14
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

27532..28692
DNA (1161bp) protein (387aa)
Group 1 glycosyl transferase n=1 Tax=Methanococcus maripaludis RepID=G0H2R6_METMI
Group 1 glycosyl transferase {ECO:0000313|EMBL:KKP39882.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
group 1 glycosyl transferase
seg (db=Seg db_id=seg from=253 to=266)
gwf2_scaffold_1157_15
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

28751..29710
DNA (960bp) protein (320aa)
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Persephonella marina (strain DSM 14350 / EX-H1) RepID=DXR_PERMH
(db=HMMPfam db_id=PF02670 from=5 to=52 evalue=1.3e-12 interpro_id=IPR013512 interpro_description=1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO=Biological Process: oxidation-reduction process (GO:0055114), Molecular Function: NADPH binding (GO:0070402))
gwf2_scaffold_1157_16
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

29717..30061
DNA (345bp) protein (115aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=71 to=85)
gwf2_scaffold_1157_17
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

30061..31341
DNA (1281bp) protein (427aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase/2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60 4.6.1.12) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase/2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60 4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase/2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=alpha proteobacterium HIMB59 RepID=J9Z0E2_9PROT
seg (db=Seg db_id=seg from=35 to=46)
gwf2_scaffold_1157_18
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(31384..31719)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) RepID=F0S1J7_DESTD
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
(db=HMMPfam db_id=PF06296 from=41 to=105 evalue=1.6e-06 interpro_id=IPR009387 interpro_description=Protein of unknown function DUF1044)
gwf2_scaffold_1157_19
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(31721..31963)
DNA (243bp) protein (81aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=6 to=18)
(db=HMMPfam db_id=PF11126 from=30 to=68 evalue=1.0e-05 interpro_id=IPR020313 interpro_description=Double-stranded DNA-binding protein)
gwf2_scaffold_1157_20
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(32483..33406)
DNA (924bp) protein (308aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=108 to=145 evalue=NA)
seg (db=Seg db_id=seg from=83 to=94)
gwf2_scaffold_1157_21
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

33522..34706
DNA (1185bp) protein (395aa)
Sugar phosphate permease n=1 Tax=Rivularia sp. PCC 7116 RepID=K9RGY3_9CYAN
sugar phosphate permease Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
major facilitator transporter
SUGAR_TRANSPORT_1 (db=PatternScan db_id=PS00216 from=62 to=79 evalue=0.0 interpro_id=IPR005829 interpro_description=Sugar transporter, conserved site GO=Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810), Cellular Component: membrane (GO:0016020), Biological Process: transmembrane transport (GO:0055085))
gwf2_scaffold_1157_22
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists


34703..35551
DNA (849bp) protein (283aa)
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=ISPE_ALKMQ
seg (db=Seg db_id=seg from=39 to=55)
gwf2_scaffold_1157_23
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

35604..36539
DNA (936bp) protein (312aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=15 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
gwf2_scaffold_1157_24
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(36536..37150)
DNA (615bp) protein (205aa)
Recombination protein RecR n=4 Tax=Thermoanaerobacterium RepID=D9TMW6_THETC
Recombination protein RecR, recombination protein RecR {ECO:0000313|EMBL:KKP39892.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
DNA replication and repair protein RecR
RECR (db=PatternScan db_id=PS01300 from=58 to=79 evalue=0.0 interpro_id=IPR015967 interpro_description=Recombination protein RecR, conserved site GO=Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
gwf2_scaffold_1157_25
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(37161..37706)
DNA (546bp) protein (182aa)
GTP cyclohydrolase, GTP cyclohydrolase I {ECO:0000313|EMBL:KKP39893.1}; EC=3.5.4.16 {ECO:0000313|EMBL:KKP39893.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bact
GTP cyclohydrolase 1 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IPJ1_KORVE
GTP cyclohydrolase
GTP_CYCLOHYDROL_1_1 (db=PatternScan db_id=PS00859 from=59 to=75 evalue=0.0 interpro_id=IPR018234 interpro_description=GTP cyclohydrolase I, conserved site GO=Molecular Function: GTP cyclohydrolase I activity (GO:0003934), Cellular Component: cytoplasm (GO:0005737), Biological Process: tetrahydrofolate biosynthetic process (GO:0046654))
gwf2_scaffold_1157_26
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(37733..38386)
DNA (654bp) protein (218aa)
Pyridoxal phosphate synthase yaaE subunit, glutamine amidotransferase {ECO:0000313|EMBL:KKP39894.1}; EC=2.6.-.- {ECO:0000313|EMBL:KKP39894.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" so
Glutamine amidotransferase subunit PdxT n=1 Tax=Thermotoga thermarum DSM 5069 RepID=F7YWA1_9THEM
pyridoxal phosphate synthase yaaE subunit
PDXT_SNO_1 (db=PatternScan db_id=PS01236 from=45 to=55 evalue=0.0 interpro_id=IPR021196 interpro_description=PdxT/SNO family, conserved site)
gwf2_scaffold_1157_27
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

38450..39676
DNA (1227bp) protein (409aa)
Major facilitator superfamily MFS_1 n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SQN5_CLOC7
major facilitator superfamily protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
major facilitator superfamily protein
SUGAR_TRANSPORT_1 (db=PatternScan db_id=PS00216 from=57 to=74 evalue=0.0 interpro_id=IPR005829 interpro_description=Sugar transporter, conserved site GO=Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810), Cellular Component: membrane (GO:0016020), Biological Process: transmembrane transport (GO:0055085))
gwf2_scaffold_1157_28
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(39647..41101)
DNA (1455bp) protein (485aa)
ComEC/Rec2-related protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UTP8_ROSS1
ComEC/Rec2-like protein; K02238 competence protein ComEC Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
ComEC/Rec2-like protein
seg (db=Seg db_id=seg from=3 to=17)
gwf2_scaffold_1157_29
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

41367..42899
DNA (1533bp) protein (511aa)
Cell envelope-related transcriptional attenuator n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THQ3_9CHLR
cell envelope-related transcriptional attenuator Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
cell envelope-related transcriptional attenuator
seg (db=Seg db_id=seg from=27 to=39)
gwf2_scaffold_1157_30
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

42970..43683
DNA (714bp) protein (238aa)
rluB2; ribosomal large subunit pseudouridine synthase B (EC:5.4.99.22) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
rluB2; ribosomal large subunit pseudouridine synthase B (EC:5.4.99.22)
Pseudouridine synthase, Rsu n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AV82_9CLOT
PSI_RSU (db=PatternScan db_id=PS01149 from=101 to=115 evalue=0.0 interpro_id=IPR018496 interpro_description=Pseudouridine synthase, RsuA and RluB/E/F, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866))
Displaying items 1-30 of 31 in total

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