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gwe1_scaffold_624

Alias: GWE1_WS6_33_547_4

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwe1_scaffold_624_1
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(3..434)
DNA (432bp) protein (144aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45899.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
(db=HMMPfam db_id=PF08486 from=71 to=134 evalue=4.8e-14 interpro_id=IPR013693 interpro_description=Sporulation stage II protein D, amidase enhancer LytB N-terminal)
gwe1_scaffold_624_2
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(1313..1684)
DNA (372bp) protein (124aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45897.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=60 to=82)
gwe1_scaffold_624_3

Not on your lists

comp(1686..1958)
DNA (273bp) protein (91aa)
hypothetical protein cdivTM_30108 n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI00016B2684
Uncharacterized protein {ECO:0000313|EMBL:KKP55356.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
gwe1_scaffold_624_4

Not on your lists

comp(2004..2366)
DNA (363bp) protein (121aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55355.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=37 to=46)
gwe1_scaffold_624_5
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(2420..2755)
DNA (336bp) protein (112aa)
seg Tax=RIFOXYB1_FULL_WS6_33_15_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=70)
seg (db=Seg db_id=seg from=100 to=107)
gwe1_scaffold_624_6
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(2745..3071)
DNA (327bp) protein (109aa)
seg Tax=RIFOXYB1_FULL_WS6_33_15_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
seg (db=Seg db_id=seg from=44 to=58)
gwe1_scaffold_624_7
WS6_GWE1_33_547, WS6_GWE1_33_547, WS6_GWE1_33_547, WS6_GWE1_33_547, Doikabacteria, Bacteria

Not on your lists

5461..5817
DNA (357bp) protein (119aa)

This feature has no annotations

gwe1_scaffold_624_8
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(6152..7021)
DNA (870bp) protein (290aa)
Endonuclease IV (EC:3.1.21.2 3.1.21.-) Tax=RIFOXYB1_FULL_WS6_33_15_curated
Endonuclease IV (EC:3.1.21.2 3.1.21.-)
Probable endonuclease 4 n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0Y8_9FIRM
AP_NUCLEASE_F2_3 (db=PatternScan db_id=PS00731 from=221 to=237 evalue=0.0 interpro_id=IPR018246 interpro_description=AP endonuclease, family 2, zinc binding site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: endonuclease activity (GO:0004519), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281), Molecular Function: zinc ion binding (GO:0008270))
gwe1_scaffold_624_9

Not on your lists

7641..7907
DNA (267bp) protein (89aa)
Kielin/chordin-like protein {ECO:0000313|EMBL:KKP55349.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
(db=HMMPfam db_id=PF05375 from=58 to=80 evalue=6.5e-07 interpro_id=IPR008037 interpro_description=Proteinase inhibitor I19, pacifastin GO=Molecular Function: peptidase inhibitor activity (GO:0030414))
gwe1_scaffold_624_10

Not on your lists

7972..8253
DNA (282bp) protein (94aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55348.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=40 to=62)
seg (db=Seg db_id=seg from=9 to=23)
gwe1_scaffold_624_11
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

8313..8786
DNA (474bp) protein (158aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45887.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
gwe1_scaffold_624_12

Not on your lists

8856..9287
DNA (432bp) protein (144aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55347.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=7 to=27 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=6 to=29 evalue=0.0094 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
gwe1_scaffold_624_13

Not on your lists

9344..10795
DNA (1452bp) protein (484aa)
Type II secretion system protein E n=12 Tax=Thermoanaerobacter RepID=B0K0R6_THEPX
Type II secretion system protein E {ECO:0000313|EMBL:KKP55346.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
type IV fimbrial assembly protein PilB
coiled-coil (db=Coil db_id=coil from=125 to=155 evalue=NA)
gwe1_scaffold_624_14
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

10792..11898
DNA (1107bp) protein (369aa)
Type II secretion system protein n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SPM7_PLAL2
type II secretion system protein; K02653 type IV pilus assembly protein PilC Tax=RIFOXYB1_FULL_WS6_33_15_curated
type II secretion system protein
T2SP_F (db=PatternScan db_id=PS00874 from=128 to=156 evalue=0.0 interpro_id=IPR001992 interpro_description=Type II secretion system conserved site GO=Biological Process: protein secretion (GO:0009306), Cellular Component: membrane (GO:0016020))
gwe1_scaffold_624_15

Not on your lists

11891..12355
DNA (465bp) protein (155aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55344.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=10 to=33 evalue=0.0065 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
Pili subunits (db=superfamily db_id=SSF54523 from=13 to=123 evalue=8.6e-12)
gwe1_scaffold_624_16

Not on your lists

12342..14249
DNA (1908bp) protein (636aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55343.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=9 to=29 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=8 to=31 evalue=0.013 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
gwe1_scaffold_624_17

Not on your lists

14239..14712
DNA (474bp) protein (158aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55342.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
Pili subunits (db=superfamily db_id=SSF54523 from=9 to=147 evalue=2.3e-06)
gwe1_scaffold_624_18

Not on your lists

14709..15083
DNA (375bp) protein (125aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55341.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
seg (db=Seg db_id=seg from=5 to=25)
gwe1_scaffold_624_19
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

15064..15669
DNA (606bp) protein (202aa)
Signal peptidase, cleaves prepilin-like protein, leader peptidase (Prepilin peptidase) / N-methyltransferase {ECO:0000313|EMBL:KKP45879.1}; EC=3.4.23.43 {ECO:0000313|EMBL:KKP45879.1};; TaxID=1619096 s
Signal peptidase, cleaves prepilin-like proteins n=1 Tax=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) RepID=A0AIZ9_LISW6
signal peptidase, cleaves prepilin-like proteins
transmembrane_regions (db=TMHMM db_id=tmhmm from=16 to=38)
gwe1_scaffold_624_20
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(15666..16196)
DNA (531bp) protein (177aa)
Tax=RIFOXYB1_FULL_WS6_33_15_curated
gwe1_scaffold_624_21

Not on your lists

comp(16451..17284)
DNA (834bp) protein (278aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55338.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
gwe1_scaffold_624_22

Not on your lists

comp(18009..18737)
DNA (729bp) protein (243aa)
RNA methyltransferase, TrmH family n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C556_9FIRM
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:KKP55337.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
tRNA/rRNA methyltransferase SpoU
(db=HMMPfam db_id=PF00588 from=99 to=234 evalue=2.7e-29 interpro_id=IPR001537 interpro_description=tRNA/rRNA methyltransferase, SpoU GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
gwe1_scaffold_624_23
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(18739..19695)
DNA (957bp) protein (319aa)
Sensory box histidine kinase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C3P5_9PLAN
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:KKP45875.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacteri
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
gwe1_scaffold_624_24

Not on your lists

comp(19705..20235)
DNA (531bp) protein (177aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55335.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
seg (db=Seg db_id=seg from=19 to=31)
gwe1_scaffold_624_25
WS6_GWC1_33_20, WS6, Bacteria

Not on your lists

comp(20288..21193)
DNA (906bp) protein (302aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44262.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWC1_33_20.;"
coiled-coil (db=Coil db_id=coil from=19 to=47 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=93 to=110)
seg (db=Seg db_id=seg from=23 to=47)
gwe1_scaffold_624_26
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(21204..21602)
DNA (399bp) protein (133aa)
seg Tax=RIFOXYB1_FULL_WS6_33_15_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=34)
seg (db=Seg db_id=seg from=57 to=78)
gwe1_scaffold_624_27
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

21647..22330
DNA (684bp) protein (228aa)
two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE
Winged helix family two component transcriptional regulator, two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR {ECO:0000313|EMBL:KKP45871.1}; TaxID=1619096
winged helix family two component transcriptional regulator
seg (db=Seg db_id=seg from=65 to=76)
gwe1_scaffold_624_28

Not on your lists

comp(22311..23432)
DNA (1122bp) protein (374aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CG53_THET1
Polymerase III subunit beta protein {ECO:0000313|EMBL:KKP55331.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
no description (db=Gene3D db_id=G3DSA:3.10.150.10 from=1 to=117 evalue=2.5e-30 interpro_id=IPR024693 interpro_description=DNA polymerase III beta, domain)
gwe1_scaffold_624_29
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(23867..25426)
DNA (1560bp) protein (520aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RYX0_THEOJ rbh
Chromosomal replication initiator protein DnaA, chromosomal replication initiator protein {ECO:0000313|EMBL:KKP45869.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate di
chromosomal replication initiator protein DnaA
no description (db=HMMSmart db_id=SM00760 from=427 to=496 evalue=1.8e-20 interpro_id=IPR013159 interpro_description=Chromosomal replication initiator, DnaA C-terminal GO=Molecular Function: ATP binding (GO:0005524), Biological Process: DNA-dependent DNA replication initiation (GO:0006270), Biological Process: regulation of DNA replication (GO:0006275), Molecular Function: sequence-specific DNA binding (GO:0043565))
gwe1_scaffold_624_30

Not on your lists


25626..25814
DNA (189bp) protein (63aa)
50S ribosomal protein L34 n=15 Tax=Xanthomonadaceae RepID=RL34_STRM5
50S ribosomal protein L34 {ECO:0000313|EMBL:KKP55329.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
50S ribosomal protein L34
RIBOSOMAL_L34 (db=PatternScan db_id=PS00784 from=4 to=23 evalue=0.0 interpro_id=IPR020939 interpro_description=Ribosomal protein L34, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying items 1-30 of 46 in total

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