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gwe1_scaffold_624

Alias: GWE1_WS6_33_547_4

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Displaying items 31-46 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwe1_scaffold_624_31

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25828..26178
DNA (351bp) protein (117aa)
Ribonuclease P protein component {ECO:0000313|EMBL:KKP55328.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
(db=HMMPfam db_id=PF00825 from=3 to=109 evalue=1.5e-14 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
rnpA: ribonuclease P protein component (db=HMMTigr db_id=TIGR00188 from=2 to=113 evalue=2.4e-11 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=1 to=115 evalue=4.2e-13 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
gwe1_scaffold_624_32

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26120..26410
DNA (291bp) protein (97aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S853_PEDSD
Uncharacterized protein {ECO:0000313|EMBL:KKP55327.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
hypothetical protein
TIGR00278: conserved hypothetical protein Y (db=HMMTigr db_id=TIGR00278 from=21 to=96 evalue=1.2e-12 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
gwe1_scaffold_624_33

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26460..27314
DNA (855bp) protein (285aa)
Membrane protein insertase, YidC/Oxa1 family n=6 Tax=Clostridium thermocellum RepID=A3DHZ0_CLOTH
Preprotein translocase YidC subunit {ECO:0000313|EMBL:KKP55326.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
membrane protein
coiled-coil (db=Coil db_id=coil from=65 to=86 evalue=NA)
gwe1_scaffold_624_34

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27325..27855
DNA (531bp) protein (177aa)
Single-stranded nucleic acid binding R3H domain protein n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BF73_MEISD
Single-stranded nucleic acid binding R3H domain protein {ECO:0000313|EMBL:KKP55325.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_3
single-stranded nucleic acid binding R3H domain-containing protein
seg (db=Seg db_id=seg from=161 to=176)
gwe1_scaffold_624_35

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comp(28018..28599)
DNA (582bp) protein (194aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55324.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
(db=HMMPfam db_id=PF06197 from=37 to=174 evalue=2.8e-08 interpro_id=IPR009339 interpro_description=Protein of unknown function DUF998)
gwe1_scaffold_624_36
WS6_GWF1_33_233, WS6, Bacteria

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comp(28833..30662)
DNA (1830bp) protein (610aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45862.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=216 to=238)
(db=HMMPfam db_id=PF04865 from=314 to=419 evalue=0.00012 interpro_id=IPR006949 interpro_description=Baseplate assembly protein J-like, predicted)
seg (db=Seg db_id=seg from=102 to=134)
gwe1_scaffold_624_37

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comp(30667..31923)
DNA (1257bp) protein (419aa)
cell division protein (septum formation) n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B214C
Cell division protein (Septum formation) {ECO:0000313|EMBL:KKP55322.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
actin
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=228 to=382 evalue=1.1e-16)
gwe1_scaffold_624_38
WS6_GWF1_33_233, WS6, Bacteria

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comp(31986..33683)
DNA (1698bp) protein (566aa)
Ribonuclease J n=1 Tax=Bacillus azotoformans LMG 9581 RepID=K6D6Y0_BACAZ rbh
Beta-lactamase {ECO:0000313|EMBL:KKP45860.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
ribonuclease J
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (db=HMMPanther db_id=PTHR11203 from=48 to=116 evalue=0.00055)
gwe1_scaffold_624_39
WS6_GWF1_33_233, WS6, Bacteria

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33974..36256
DNA (2283bp) protein (761aa)
Valyl-tRNA synthetase, valyl-tRNA synthetase {ECO:0000313|EMBL:KKP45859.1}; EC=6.1.1.9 {ECO:0000313|EMBL:KKP45859.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate divi
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CY39_HALOH rbh
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=55 to=66 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
gwe1_scaffold_624_40
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists


comp(36526..38304)
DNA (1779bp) protein (593aa)
Methionyl-tRNA synthetase, methionyl-tRNA synthetase {ECO:0000313|EMBL:KKP45858.1}; EC=6.1.1.10 {ECO:0000313|EMBL:KKP45858.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candi
Methionyl-tRNA synthetase n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TWX7_9EURY rbh
Methionyl-tRNA synthetase
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=30 to=41 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
gwe1_scaffold_624_41
WS6_GWF1_33_233, WS6, Bacteria

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38366..38923
DNA (558bp) protein (186aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45857.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
gwe1_scaffold_624_42

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38926..39543
DNA (618bp) protein (206aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55316.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
gwe1_scaffold_624_43
WS6_GWF1_33_233, WS6, Bacteria

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39547..39786
DNA (240bp) protein (80aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45855.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
seg (db=Seg db_id=seg from=9 to=19)
gwe1_scaffold_624_44
GWD1_WS6_35_594, WS6, Bacteria

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comp(39783..40871)
DNA (1089bp) protein (363aa)
RNA polymerase sigma factor n=1 Tax=Peptoniphilus duerdenii ATCC BAA-1640 RepID=E0NLJ5_9FIRM rbh
RNA polymerase sigma factor {ECO:0000313|EMBL:KKP82655.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
RNA polymerase sigma-70 subunit RpoD
SIGMA70_1 (db=PatternScan db_id=PS00715 from=152 to=165 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
gwe1_scaffold_624_45

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40898..41242
DNA (345bp) protein (115aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55313.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
gwe1_scaffold_624_46

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comp(41243..42034)
DNA (792bp) protein (264aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55312.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
Displaying items 31-46 of 46 in total

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