ggKbase home page

gwf2_scaffold_174

Alias: PER_GWF2_39_17_2

Search features with annotation key words

Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_174_1
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

2..169
DNA (168bp) protein (56aa)
Tax=PER_GWF2_39_17
gwf2_scaffold_174_2
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

321..797
DNA (477bp) protein (159aa)
Uncharacterized protein n=2 Tax=Vibrio RepID=K5ULV0_9VIBR
hypothetical protein Tax=PER_GWF2_39_17
hypothetical protein
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=2 to=158 evalue=7.1e-24)
gwf2_scaffold_174_3
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

958..1227
DNA (270bp) protein (90aa)
seg Tax=PER_GWF2_39_17
seg (db=Seg db_id=seg from=59 to=83)
gwf2_scaffold_174_4
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

1387..1911
DNA (525bp) protein (175aa)
Tax=PER_GWF2_39_17
gwf2_scaffold_174_5
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(2139..2912)
DNA (774bp) protein (258aa)
alpha/beta-Hydrolases Tax=PER_GWF2_39_17
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=41 to=229 evalue=2.1e-15)
gwf2_scaffold_174_6
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(3090..3827)
DNA (738bp) protein (246aa)
no description Tax=PER_GWF2_39_17
coiled-coil (db=Coil db_id=coil from=92 to=113 evalue=NA)
seg (db=Seg db_id=seg from=115 to=118)
(db=HMMPfam db_id=PF01583 from=48 to=164 evalue=2.2e-05 interpro_id=IPR002891 interpro_description=Adenylylsulphate kinase, C-terminal GO=Biological Process: sulfate assimilation (GO:0000103), Molecular Function: ATP binding (GO:0005524), Molecular Function: kinase activity (GO:0016301), Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772))
gwf2_scaffold_174_7
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

4306..5412
DNA (1107bp) protein (369aa)
bifunctional phosphoglucose/phosphomannose isomerase; K15916 glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] Tax=PER_GWF2_39_17
Bifunctional phosphoglucose/phosphomannose isomerase n=1 Tax=Streptomyces iakyrus RepID=H8W3V9_9ACTO rbh
bifunctional phosphoglucose/phosphomannose isomerase
coiled-coil (db=Coil db_id=coil from=196 to=217 evalue=NA)
gwf2_scaffold_174_8
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(5554..7644)
DNA (2091bp) protein (697aa)
Tax=PER_GWF2_39_17
gwf2_scaffold_174_9
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

7951..8586
DNA (636bp) protein (212aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR09043.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_39_17.;"
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=210 evalue=3.7e-12)
gwf2_scaffold_174_10
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

8727..8876
DNA (150bp) protein (50aa)
Putative uncharacterized protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WTP9_GEOS8
hypothetical protein Tax=PER_GWF2_39_17
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=39)
gwf2_scaffold_174_11
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

9089..9499
DNA (411bp) protein (137aa)
hypothetical protein PpisJ2_02993 n=2 Tax=Pseudoalteromonas RepID=UPI00026CF072
hypothetical protein Tax=PER_GWF2_39_17
hypothetical protein
Uncharacterised conserved protein, UCP033763 type (db=HMMPIR db_id=PIRSF033736 from=1 to=136 evalue=1.9e-29 interpro_id=IPR017021 interpro_description=Uncharacterised conserved protein UCP033763)
gwf2_scaffold_174_12
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

9490..9945
DNA (456bp) protein (152aa)
Rifampin ADP-ribosylating transferase n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L170_HALH1
rifampin ADP-ribosylating transferase Tax=PER_GWF2_39_17
rifampin ADP-ribosylating transferase
(db=HMMPfam db_id=PF12120 from=25 to=123 evalue=5.7e-49 interpro_id=IPR021975 interpro_description=DNA/RNA tunnel of bacterial DNA dependent RNA polymerase)
gwf2_scaffold_174_13
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

10053..10637
DNA (585bp) protein (195aa)
Uncharacterized protein n=5 Tax=Lactococcus lactis RepID=D2BQN7_LACLK
ylfA; hypothetical protein Tax=PER_GWF2_39_17
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
gwf2_scaffold_174_14
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

10648..11349
DNA (702bp) protein (234aa)
lysS; lysyl-tRNA synthetase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] Tax=PER_GWF2_39_17
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Simkania negevensis (strain ATCC VR-1471 / Z) RepID=F8L9N0_SIMNZ
seg (db=Seg db_id=seg from=116 to=128)
gwf2_scaffold_174_15
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

11375..11653
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) RepID=C6WYF9_METML
Uncharacterized protein {ECO:0000313|EMBL:KKR09049.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_39_17.;"
conserved protein of unknown function
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=50)
gwf2_scaffold_174_16
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

11758..12219
DNA (462bp) protein (154aa)
Possible ribosomal-protein-alanine N-acetyltransferase n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BG71_9FIRM
acetyltransferase Tax=PER_GWF2_39_17
acetyltransferase
seg (db=Seg db_id=seg from=93 to=104)
gwf2_scaffold_174_17
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

12491..13174
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Formosa sp. AK20 RepID=M7MG71_9FLAO
methyltransferase type 12 Tax=PER_GWF2_39_17
methyltransferase type 12
seg (db=Seg db_id=seg from=78 to=93)
gwf2_scaffold_174_18
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

13354..14265
DNA (912bp) protein (304aa)
Putative Co/Zn/Cd cation transporter n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AH25_IGNAJ rbh
Putative Co/Zn/Cd cation transporter Tax=PER_GWF2_39_17
Co/Zn/Cd cation transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
gwf2_scaffold_174_19
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

14273..15943
DNA (1671bp) protein (557aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR26077.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE2_39_6.;"
gwf2_scaffold_174_20
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

16034..16990
DNA (957bp) protein (319aa)
Na+/Ca+ antiporter, CaCA family n=1 Tax=Leptonema illini DSM 21528 RepID=H2CDV5_9LEPT rbh
Na+/Ca+ antiporter, CaCA family, inner membrane protein {ECO:0000313|EMBL:KKR09054.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_39_17.;"
Na+/Ca+ antiporter, CaCA family
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
gwf2_scaffold_174_21
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

17066..17989
DNA (924bp) protein (308aa)
no description Tax=PER_GWF2_39_17
no description (db=Gene3D db_id=G3DSA:3.75.10.10 from=49 to=305 evalue=1.8e-13)
(db=HMMPfam db_id=PF02274 from=88 to=209 evalue=1.0e-07 interpro_id=IPR003198 interpro_description=Amidinotransferase GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines (GO:0016813))
Pentein (db=superfamily db_id=SSF55909 from=49 to=305 evalue=5.3e-25)
gwf2_scaffold_174_22
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

18140..19492
DNA (1353bp) protein (451aa)
guanine deaminase; K01487 guanine deaminase [EC:3.5.4.3] Tax=PER_GWF2_39_17
Guanine deaminase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK88_9BACT rbh
Guanine deaminase
seg (db=Seg db_id=seg from=123 to=132)
gwf2_scaffold_174_23
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(19428..20261)
DNA (834bp) protein (278aa)
pantothenate kinase; K09680 type II pantothenate kinase [EC:2.7.1.33] Tax=PER_GWF2_39_17
Pantothenate kinase n=3 Tax=Clostridium RepID=B8I7S7_CLOCE
pantothenate kinase
seg (db=Seg db_id=seg from=127 to=135)
gwf2_scaffold_174_24
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(20292..21935)
DNA (1644bp) protein (548aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR09058.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_39_17.;"
Glucocorticoid receptor-like (DNA-binding domain) (db=superfamily db_id=SSF57716 from=516 to=546 evalue=0.00062)
gwf2_scaffold_174_25
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

22053..22475
DNA (423bp) protein (141aa)
Bacterioferritin (BFR) (Cytochrome B-557.5) n=1 Tax=Persephonella marina (strain DSM 14350 / EX-H1) RepID=C0QT98_PERMH
bacterioferritin (BFR) (cytochrome B-557.5); K03594 bacterioferritin Tax=PER_GWF2_39_17
bacterioferritin (BFR) (cytochrome B-557.5)
coiled-coil (db=Coil db_id=coil from=91 to=112 evalue=NA)
Bacterioferritin (Interpro) Jill Banfield (9/15/17)
gwf2_scaffold_174_26
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(22476..22856)
DNA (381bp) protein (127aa)
Tetrapyrrole methyltransferase domain-containing/MazG-like protein domain-containing protein, dITP/XTP pyrophosphatase {ECO:0000313|EMBL:KKR09060.1}; EC=3.6.1.19 {ECO:0000313|EMBL:KKR09060.1};; TaxID=
Protein containing tetrapyrrole methyltransferase domain and MazG-like (Predicted pyrophosphatase) domain n=1 Tax=Elusimicrobium minutum (strain Pei191) RepID=B2KAT1_ELUMP
tetrapyrrole methyltransferase domain-containing/MazG-like domain-containing protein
seg (db=Seg db_id=seg from=116 to=126)
MazG confirmed by HMM Jill Banfield (9/15/17)
gwf2_scaffold_174_27
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(22885..23817)
DNA (933bp) protein (311aa)
tRNA dimethylallyltransferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=PER_GWF2_39_17
tRNA dimethylallyltransferase n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LUD8_TEPAE
tRNA dimethylallyltransferase
miaA: tRNA delta(2)-isopentenylpyrophosphate (db=HMMTigr db_id=TIGR00174 from=22 to=304 evalue=1.5e-104 interpro_id=IPR018022 interpro_description=tRNA delta(2)-isopentenylpyrophosphate transferase GO=Biological Process: tRNA processing (GO:0008033))
gwf2_scaffold_174_28
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(23841..24743)
DNA (903bp) protein (301aa)
radical SAM protein; K04070 putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] Tax=PER_GWF2_39_17
Radical SAM domain protein n=12 Tax=Thermoanaerobacter RepID=B0K6V6_THEPX
radical SAM protein
RADICAL_ACTIVATING (db=PatternScan db_id=PS01087 from=51 to=72 evalue=0.0 interpro_id=IPR001989 interpro_description=Radical-activating enzyme, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_174_29
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists


24947..25621
DNA (675bp) protein (225aa)
50S ribosomal protein L10 n=6 Tax=Clostridium thermocellum RepID=A3DIZ2_CLOTH
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 Tax=PER_GWF2_39_17
50S ribosomal protein L10
RIBOSOMAL_L10 (db=PatternScan db_id=PS01109 from=8 to=42 evalue=0.0 interpro_id=IPR002363 interpro_description=Ribosomal protein L10, eubacterial, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf2_scaffold_174_30
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists


25659..26069
DNA (411bp) protein (137aa)
50S ribosomal protein L7/L12 n=2 Tax=Dialister micraerophilus RepID=E4L971_9FIRM
50S ribosomal protein L7/L12, large subunit ribosomal protein L7/L12 {ECO:0000313|EMBL:KKR25742.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE
ribosomal protein L7/L12
seg (db=Seg db_id=seg from=44 to=66)
Displaying items 1-30 of 99 in total

View Taxonomy