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gwf2_scaffold_332

Alias: PER_GWF2_39_17_5

Search features with annotation key words

Displaying items 61-90 of 110 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_332_61
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(77065..77658)
DNA (594bp) protein (198aa)
Superoxide dismutase (Mn/Fe), superoxide dismutase, Fe-Mn family {ECO:0000313|EMBL:KKR08690.1}; EC=1.15.1.1 {ECO:0000313|EMBL:KKR08690.1};; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source
sod; superoxide dismutase (Mn/Fe) (EC:1.15.1.1)
Superoxide dismutase n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BZF7_METCG
SOD_MN (db=PatternScan db_id=PS00088 from=161 to=168 evalue=0.0 interpro_id=IPR019833 interpro_description=Manganese/iron superoxide dismutase, binding site GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_332_62
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(77727..78446)
DNA (720bp) protein (240aa)
coiled-coil Tax=PER_GWF2_39_17
coiled-coil (db=Coil db_id=coil from=22 to=53 evalue=NA)
seg (db=Seg db_id=seg from=33 to=48)
gwf2_scaffold_332_63
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists


comp(78548..78820)
DNA (273bp) protein (91aa)
50S ribosomal protein L27 n=1 Tax=Alteromonas sp. S89 RepID=UPI0002559D06
50S ribosomal protein L27, large subunit ribosomal protein L27 {ECO:0000313|EMBL:KKR25719.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE2_39_6
50S ribosomal protein L27
RIBOSOMAL_L27 (db=PatternScan db_id=PS00831 from=34 to=48 evalue=0.0 interpro_id=IPR018261 interpro_description=Ribosomal protein L27, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf2_scaffold_332_64
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

79073..80788
DNA (1716bp) protein (572aa)
DNA Polymerase X family (EC:2.7.7.7)
DNA Polymerase X family n=7 Tax=Coxiella burnetii RepID=A9KEA4_COXBN rbh
DNA-binding/PHP domain-containing protein; K02347 DNA polymerase (family X) Tax=PER_GWF2_39_17
seg (db=Seg db_id=seg from=113 to=135)
gwf2_scaffold_332_65
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

80904..81284
DNA (381bp) protein (127aa)
PROKAR_LIPOPROTEIN Tax=PER_GWF2_39_17
seg (db=Seg db_id=seg from=96 to=107)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=6.0)
gwf2_scaffold_332_66
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

81287..82042
DNA (756bp) protein (252aa)
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TSL7_ALKMQ
16S rRNA methyltransferase Tax=PER_GWF2_39_17
16S ribosomal RNA methyltransferase RsmE
TIGR00046: RNA methyltransferase, RsmE fami (db=HMMTigr db_id=TIGR00046 from=9 to=245 evalue=1.3e-39 interpro_id=IPR006700 interpro_description=Ribosomal RNA small subunit methyltransferase E GO=Biological Process: rRNA processing (GO:0006364), Molecular Function: methyltransferase activity (GO:0008168))
gwf2_scaffold_332_67
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

82053..82712
DNA (660bp) protein (220aa)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Helcococcus kunzii ATCC 51366 RepID=H3NQV0_9FIRM
16S rRNA methyltransferase Tax=PER_GWF2_39_17
methyltransferase GidB
coiled-coil (db=Coil db_id=coil from=156 to=177 evalue=NA)
gwf2_scaffold_332_68
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(82752..85118)
DNA (2367bp) protein (789aa)
Putative D-alanine--D-alanine ligase n=1 Tax=Protochlamydia amoebophila (strain UWE25) RepID=Q6ME77_PARUW rbh
ddlA; D-alanine--D-alanine ligase Tax=PER_GWF2_39_17
ddlA; D-alanine--D-alanine ligase
DALA_DALA_LIGASE_2 (db=PatternScan db_id=PS00844 from=726 to=755 evalue=0.0 interpro_id=IPR000291 interpro_description=D-alanine--D-alanine ligase/VANA/B/C, conserved site)
gwf2_scaffold_332_69
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

85349..86341
DNA (993bp) protein (331aa)
ketol-acid reductoisomerase (EC:1.1.1.86); K00053 ketol-acid reductoisomerase [EC:1.1.1.86] Tax=PER_GWF2_39_17
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=2 Tax=environmental samples RepID=D1JA89_9ARCH rbh
ilvC: ketol-acid reductoisomerase (db=HMMTigr db_id=TIGR00465 from=16 to=330 evalue=3.4e-121 interpro_id=IPR013023 interpro_description=Acetohydroxy acid isomeroreductase GO=Biological Process: branched chain family amino acid biosynthetic process (GO:0009082), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_332_70
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(86385..88325)
DNA (1941bp) protein (647aa)
coiled-coil Tax=PER_GWF2_39_17
coiled-coil (db=Coil db_id=coil from=208 to=229 evalue=NA)
gwf2_scaffold_332_71
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

88387..88833
DNA (447bp) protein (149aa)
Putative peptide chain release factor 1 n=1 Tax=Simkania negevensis (strain ATCC VR-1471 / Z) RepID=F8L815_SIMNZ
prfA3; putative peptide chain release factor 1 Tax=PER_GWF2_39_17
prfA3; putative peptide chain release factor 1
seg (db=Seg db_id=seg from=106 to=138)
gwf2_scaffold_332_72
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

88836..89324
DNA (489bp) protein (163aa)
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GY92_METFV
23S rRNA methyltransferase Tax=PER_GWF2_39_17
cell division protein FtsJ
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=19 to=157 evalue=1.5e-26)
gwf2_scaffold_332_73
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

89555..90979
DNA (1425bp) protein (475aa)
aspA; aspartate ammonia-lyase; K01744 aspartate ammonia-lyase [EC:4.3.1.1] Tax=PER_GWF2_39_17
Fumarate lyase n=1 Tax=Geobacter sp. (strain FRC-32) RepID=B9M6Q3_GEOSF rbh
aspA; aspartate ammonia-lyase
FUMARATE_LYASES (db=PatternScan db_id=PS00163 from=317 to=326 evalue=0.0 interpro_id=IPR020557 interpro_description=Fumarate lyase, conserved site GO=Molecular Function: catalytic activity (GO:0003824))
gwf2_scaffold_332_74
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(91026..93290)
DNA (2265bp) protein (755aa)
Uncharacterized protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46BK1_METBF
PKD domain containing protein Tax=PER_GWF2_39_17
cell surface protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=83 to=105)
gwf2_scaffold_332_75
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(93344..98059)
DNA (4716bp) protein (1572aa)
PKD domain containing protein n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NZ68_HALMD
PKD domain-containing protein Tax=PER_GWF2_39_17
PDK repeat-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
gwf2_scaffold_332_76
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(98302..99261)
DNA (960bp) protein (320aa)
transmembrane_regions Tax=PER_GWF2_39_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=32)
seg (db=Seg db_id=seg from=92 to=107)
gwf2_scaffold_332_77
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(99286..100227)
DNA (942bp) protein (314aa)
transmembrane_regions Tax=PER_GWF2_39_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=153 to=165)
gwf2_scaffold_332_78
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

100445..100660
DNA (216bp) protein (72aa)
Protein translocase complex, SecE/Sec61-gamma subunit Tax=PER_GWF2_39_17
SECE_SEC61G (db=PatternScan db_id=PS01067 from=10 to=38 evalue=0.0 interpro_id=IPR001901 interpro_description=Protein translocase complex, SecE/Sec61-gamma subunit GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
seg (db=Seg db_id=seg from=28 to=47)
gwf2_scaffold_332_79
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

100644..101189
DNA (546bp) protein (182aa)
Transcription termination/antitermination protein nusG n=3 Tax=Desulfotomaculum RepID=F6B584_DESCC
transcription termination/antitermination factor NusG; K02601 transcriptional antiterminator NusG Tax=PER_GWF2_39_17
transcription termination/antitermination factor NusG
NUSG (db=PatternScan db_id=PS01014 from=164 to=173 evalue=0.0 interpro_id=IPR015869 interpro_description=Transcription antitermination protein, NusG, bacteria, conserved site)
gwf2_scaffold_332_80
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

101215..101946
DNA (732bp) protein (244aa)
transmembrane_regions Tax=PER_GWF2_39_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=8 to=22)
gwf2_scaffold_332_81
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists


102028..102453
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Trichodesmium erythraeum (strain IMS101) RepID=RL11_TRIEI
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=PER_GWF2_39_17
rplK; 50S ribosomal protein L11
RIBOSOMAL_L11 (db=PatternScan db_id=PS00359 from=126 to=141 evalue=0.0 interpro_id=IPR020785 interpro_description=Ribosomal protein L11, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf2_scaffold_332_82
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists


102539..103234
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=8 Tax=Firmicutes RepID=D6HJ39_9FIRM
50S ribosomal protein L1, large subunit ribosomal protein L1 {ECO:0000313|EMBL:KKR25642.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE2_39_6.;
50S ribosomal protein L1
no description (db=Gene3D db_id=G3DSA:3.30.190.20 from=2 to=228 evalue=1.2e-43 interpro_id=IPR016094 interpro_description=Ribosomal protein L1, 2-layer alpha/beta-sandwich GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf2_scaffold_332_83
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

103236..103682
DNA (447bp) protein (149aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut, dUTP pyrophosphatase {ECO:0000313|EMBL:KKR08712.1}; EC=3.6.1.23 {ECO:0000313|EMBL:KKR08712.1};; TaxID=1619067 species="Bacteria; Peregrinibacteria
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TNJ8_9CHLR
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
no description (db=Gene3D db_id=G3DSA:2.70.40.10 from=6 to=147 evalue=1.5e-32)
gwf2_scaffold_332_84
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

103728..104309
DNA (582bp) protein (194aa)
UPI0002C2EE9E related cluster n=1 Tax=unknown RepID=UPI0002C2EE9E
Thymidylate kinase Tax=PER_GWF2_39_17
Thymidylate kinase
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=2 to=191 evalue=2.0e-20)
gwf2_scaffold_332_85
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

104344..105201
DNA (858bp) protein (286aa)
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] Tax=PER_GWF2_39_17
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Bifunctional protein FolD n=1 Tax=Halobacillus sp. BAB-2008 RepID=L5N638_9BACI rbh
THF_DHG_CYH_2 (db=PatternScan db_id=PS00767 from=258 to=266 evalue=0.0 interpro_id=IPR020867 interpro_description=Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: folic acid-containing compound biosynthetic process (GO:0009396), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_332_86
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

105275..106798
DNA (1524bp) protein (508aa)
purF; amidophosphoribosyltransferase (EC:2.4.2.14); K00764 amidophosphoribosyltransferase [EC:2.4.2.14] Tax=PER_GWF2_39_17
purF; amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SJC5_HAHCH rbh
seg (db=Seg db_id=seg from=280 to=291)
gwf2_scaffold_332_87
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

106831..108147
DNA (1317bp) protein (439aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] Tax=PER_GWF2_39_17
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LR97_SYNAS rbh
GARS (db=PatternScan db_id=PS00184 from=295 to=302 evalue=0.0 interpro_id=IPR020559 interpro_description=Phosphoribosylglycinamide synthetase, conserved site GO=Molecular Function: phosphoribosylamine-glycine ligase activity (GO:0004637), Biological Process: purine base biosynthetic process (GO:0009113))
gwf2_scaffold_332_88
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(108144..109442)
DNA (1299bp) protein (433aa)
peptidase U32; K08303 putative protease [EC:3.4.-.-] Tax=PER_GWF2_39_17
Peptidase U32 n=2 Tax=Flavobacteriales RepID=G8X8R2_FLACA rbh
peptidase U32
PEPTIDASE_U32 (db=PatternScan db_id=PS01276 from=187 to=205 evalue=0.0 interpro_id=IPR001539 interpro_description=Peptidase U32 GO=Biological Process: proteolysis (GO:0006508), Molecular Function: peptidase activity (GO:0008233))
gwf2_scaffold_332_89
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(109453..111159)
DNA (1707bp) protein (569aa)
tyrA; chorismate mutase/prephenate dehydrogenase (EC:1.3.1.12 5.4.99.5); K14187 chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] Tax=PER_GWF2_39_17
Chorismate mutase/prephenate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8E2_GEMAT
Prephenate dehydrogenase
PREPHENATE_DEHYDR_2 (db=PatternScan db_id=PS00858 from=506 to=513 evalue=0.0 interpro_id=IPR018528 interpro_description=Prephenate dehydratase, conserved site GO=Molecular Function: prephenate dehydratase activity (GO:0004664), Biological Process: L-phenylalanine biosynthetic process (GO:0009094))
gwf2_scaffold_332_90
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(111159..111647)
DNA (489bp) protein (163aa)
transmembrane_regions Tax=PER_GWF2_39_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
seg (db=Seg db_id=seg from=9 to=22)
Displaying items 61-90 of 110 in total

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