ggKbase home page

gwf2_scaffold_332

Alias: PER_GWF2_39_17_5

Search features with annotation key words

Displaying items 1-30 of 110 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_332_1
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

169..834
DNA (666bp) protein (222aa)
Signal peptidase I, signal peptidase I {ECO:0000313|EMBL:KKR23419.1}; EC=3.4.21.89 {ECO:0000313|EMBL:KKR23419.1};; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacte
signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) RepID=E6VRC0_DESAO
SPASE_I_2 (db=PatternScan db_id=PS00760 from=105 to=117 evalue=0.0 interpro_id=IPR019757 interpro_description=Peptidase S26A, signal peptidase I, lysine active site GO=Molecular Function: serine-type peptidase activity (GO:0008236), Cellular Component: integral to membrane (GO:0016021))
gwf2_scaffold_332_2
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(855..1250)
DNA (396bp) protein (132aa)
transmembrane_regions Tax=PER_GWF2_39_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
seg (db=Seg db_id=seg from=46 to=57)
gwf2_scaffold_332_3
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(1257..2000)
DNA (744bp) protein (248aa)
transmembrane_regions Tax=PER_GWF2_39_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=148 to=170)
gwf2_scaffold_332_4
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

2103..3032
DNA (930bp) protein (310aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=PER_GWF2_39_17
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) RepID=F0S0J3_DESTD
(db=HMMPfam db_id=PF02911 from=204 to=301 evalue=1.7e-18 interpro_id=IPR005793 interpro_description=Formyl transferase, C-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
gwf2_scaffold_332_5
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(2999..4321)
DNA (1323bp) protein (441aa)
transmembrane_regions Tax=PER_GWF2_39_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=57)
seg (db=Seg db_id=seg from=149 to=160)
gwf2_scaffold_332_6
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(4344..5780)
DNA (1437bp) protein (479aa)
Extracellular solute-binding protein family 1 n=11 Tax=Rhizobium RepID=B6A4J6_RHILW
Extracellular solute-binding protein family 1 Tax=PER_GWF2_39_17
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
gwf2_scaffold_332_7
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(5798..6736)
DNA (939bp) protein (313aa)
Glycosyl transferase, family 2 n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G6B1_GEOUR
glycosyl transferase family protein Tax=PER_GWF2_39_17
glycosyl transferase family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=261 to=283)
gwf2_scaffold_332_8
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(6761..7150)
DNA (390bp) protein (130aa)
Single-stranded DNA-binding protein n=7 Tax=Dehalococcoides mccartyi RepID=A5FQL2_DEHSB
ssb; single-strand binding protein; K03111 single-strand DNA-binding protein Tax=PER_GWF2_39_17
hypothetical protein
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=2 to=114 evalue=1.3e-40 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
gwf2_scaffold_332_9
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

7255..7836
DNA (582bp) protein (194aa)
riboflavin synthase subunit alpha; K00793 riboflavin synthase [EC:2.5.1.9] Tax=PER_GWF2_39_17
Riboflavin synthase, alpha subunit n=1 Tax=Actinomyces neuii BVS029A5 RepID=K0YV54_9ACTO
riboflavin synthase subunit alpha
(db=HMMPfam db_id=PF00677 from=3 to=85 evalue=1.1e-19 interpro_id=IPR001783 interpro_description=Lumazine-binding protein GO=Molecular Function: riboflavin synthase activity (GO:0004746), Biological Process: riboflavin biosynthetic process (GO:0009231))
gwf2_scaffold_332_10
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

7915..8304
DNA (390bp) protein (130aa)
6,7-dimethyl-8-ribityllumazine synthase (Fragment) n=1 Tax=Nematostella vectensis RepID=A8DVC9_NEMVE
hypothetical protein Tax=PER_GWF2_39_17
ribH; riboflavin synthase subunit beta
6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE (DMRL SYNTHASE) (LUMAZINE SYNTHASE) (db=HMMPanther db_id=PTHR21058 from=1 to=127 evalue=1.1e-30 interpro_id=IPR002180 interpro_description=6,7-dimethyl-8-ribityllumazine synthase GO=Biological Process: riboflavin biosynthetic process (GO:0009231), Cellular Component: riboflavin synthase complex (GO:0009349))
gwf2_scaffold_332_11
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(8288..10855)
DNA (2568bp) protein (856aa)
ATP-dependent chaperone ClpB n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ADD3_THEID rbh
ATP-dependent chaperone ClpB, ATP-dependent Clp protease ATP-binding subunit ClpB {ECO:0000313|EMBL:KKR08640.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacteri
ATP-dependent chaperone ClpB
CLPAB_1 (db=PatternScan db_id=PS00870 from=289 to=301 evalue=0.0 interpro_id=IPR018368 interpro_description=Chaperonin ClpA/B, conserved site GO=Molecular Function: ATP binding (GO:0005524))
gwf2_scaffold_332_12
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

11032..12111
DNA (1080bp) protein (360aa)
RNA polymerase sigma factor n=1 Tax=alpha proteobacterium HIMB59 RepID=J9Z1S3_9PROT
rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor Tax=PER_GWF2_39_17
hypothetical protein
seg (db=Seg db_id=seg from=5 to=19)
gwf2_scaffold_332_13
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

12566..12838
DNA (273bp) protein (91aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR25663.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE2_39_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=43 to=65)
gwf2_scaffold_332_14
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

12842..16405
DNA (3564bp) protein (1188aa)
DNA polymerase III catalytic subunit, DnaE type; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] Tax=PER_GWF2_39_17
DNA polymerase III catalytic subunit, DnaE type n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QS87_ACEAZ rbh
DNA polymerase III catalytic subunit, DnaE type
polc: DNA polymerase III, alpha subunit (db=HMMTigr db_id=TIGR00594 from=3 to=1016 evalue=0.0 interpro_id=IPR004805 interpro_description=DNA polymerase III, alpha subunit GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408))
gwf2_scaffold_332_15
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists


16441..18198
DNA (1758bp) protein (586aa)
aspartyl-tRNA synthetase; K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] Tax=PER_GWF2_39_17
Aspartate--tRNA ligase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C339_SPHTD rbh
aspartyl-tRNA synthetase
seg (db=Seg db_id=seg from=194 to=205)
gwf2_scaffold_332_16
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(18241..20055)
DNA (1815bp) protein (605aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IG07_9CHLR
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein Tax=PER_GWF2_39_17
RND family efflux transporter MFP subunit
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
gwf2_scaffold_332_17
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

20167..20871
DNA (705bp) protein (235aa)
ABC transporter related protein n=1 Tax=uncultured planctomycete RepID=H5SFR8_9BACT
ABC-type antimicrobial peptide transport system ATPase component; K02003 putative ABC transport system ATP-binding protein Tax=PER_GWF2_39_17
ABC transporter
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=150 to=164 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
gwf2_scaffold_332_18
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

20875..22119
DNA (1245bp) protein (415aa)
Putative uncharacterized protein n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CNB6_DESK7 rbh
hypothetical protein; K02004 putative ABC transport system permease protein Tax=PER_GWF2_39_17
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=23 to=45)
gwf2_scaffold_332_19
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

22131..23381
DNA (1251bp) protein (417aa)
ABC transporter, permease protein n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YDE6_DICT6
ABC transporter permease; K02004 putative ABC transport system permease protein Tax=PER_GWF2_39_17
MacB-like periplasmic core domain containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
gwf2_scaffold_332_20
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

23459..25960
DNA (2502bp) protein (834aa)
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS42_9BACT rbh
ATPase Tax=PER_GWF2_39_17
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
gwf2_scaffold_332_21
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

26028..26630
DNA (603bp) protein (201aa)
seg Tax=PER_GWF2_39_17
seg (db=Seg db_id=seg from=23 to=45)
gwf2_scaffold_332_22
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

26775..28229
DNA (1455bp) protein (485aa)
transmembrane_regions Tax=PER_GWF2_39_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=29)
coiled-coil (db=Coil db_id=coil from=261 to=282 evalue=NA)
seg (db=Seg db_id=seg from=269 to=281)
gwf2_scaffold_332_23
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(28251..28871)
DNA (621bp) protein (207aa)
Metal dependent phosphohydrolase n=1 Tax=Thermodesulfobacterium sp. (strain OPB45) RepID=F8C5X4_THESO
metal dependent phosphohydrolase Tax=PER_GWF2_39_17
metal dependent phosphohydrolase
no description (db=HMMSmart db_id=SM00471 from=15 to=152 evalue=0.00043 interpro_id=IPR003607 interpro_description=Metal-dependent phosphohydrolase, HD domain GO=Molecular Function: catalytic activity (GO:0003824))
gwf2_scaffold_332_24
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

comp(28868..29293)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J8I9_DESRM
Uncharacterized protein {ECO:0000313|EMBL:KKR24172.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE2_39_6.;"
hypothetical protein
HI0065_YjeE: ATPase, YjeE family (db=HMMTigr db_id=TIGR00150 from=6 to=141 evalue=4.2e-22 interpro_id=IPR003442 interpro_description=Uncharacterised domain UPF0079, ATPase bacteria)
gwf2_scaffold_332_25
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

29392..31344
DNA (1953bp) protein (651aa)
Modifier protein of major autolysin LytC n=1 Tax=Planococcus donghaensis MPA1U2 RepID=E7RHV3_9BACL
hypothetical protein Tax=PER_GWF2_39_17
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=41)
gwf2_scaffold_332_26
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(31519..32259)
DNA (741bp) protein (247aa)
CAAX amino terminal protease family n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K616_HALHC
hypothetical protein; K07052 Tax=PER_GWF2_39_17
CAAX amino terminal protease family
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
gwf2_scaffold_332_27
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

32407..33468
DNA (1062bp) protein (354aa)
Holliday junction DNA helicase RuvB, holliday junction DNA helicase RuvB {ECO:0000313|EMBL:KKR08656.1}; EC=3.6.4.12 {ECO:0000313|EMBL:KKR08656.1};; TaxID=1619067 species="Bacteria; Peregrinibacteria.;
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=RUVB_GEOLS rbh
ruvB; Holliday junction DNA helicase RuvB
(db=HMMPfam db_id=PF05496 from=24 to=248 evalue=1.4e-106 interpro_id=IPR008824 interpro_description=DNA helicase, Holliday junction RuvB type, N-terminal GO=Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Molecular Function: four-way junction helicase activity (GO:0009378))
gwf2_scaffold_332_28
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

33497..35038
DNA (1542bp) protein (514aa)
transmembrane_regions Tax=PER_GWF2_39_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
seg (db=Seg db_id=seg from=7 to=24)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=25 evalue=6.0)
gwf2_scaffold_332_29
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

35236..37821
DNA (2586bp) protein (862aa)
ATPases with chaperone activity, ATP-binding subunit n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RM39_MOOTA rbh
ATPases with chaperone activity, ATP-binding subunit; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC Tax=PER_GWF2_39_17
ATPases with chaperone activity, ATP-binding subunit
CLPAB_1 (db=PatternScan db_id=PS00870 from=347 to=359 evalue=0.0 interpro_id=IPR018368 interpro_description=Chaperonin ClpA/B, conserved site GO=Molecular Function: ATP binding (GO:0005524))
gwf2_scaffold_332_30
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists


37898..39175
DNA (1278bp) protein (426aa)
RNA binding S1 domain protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B22D3
RNA binding S1 domain-containing protein; K02945 small subunit ribosomal protein S1 Tax=PER_GWF2_39_17
RNA binding S1 protein
coiled-coil (db=Coil db_id=coil from=374 to=400 evalue=NA)
Displaying items 1-30 of 110 in total

View Taxonomy