ggKbase home page

DolJOral78_scaffold_676

Search features with annotation key words

Displaying items 1-30 of 56 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_676_1
unknown

Not on your lists

comp(96..530)
DNA (435bp) protein (145aa)

This feature has no annotations

DolJOral78_scaffold_676_2
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

618..2222
DNA (1605bp) protein (535aa)
SpoIID/LytB domain protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LGL2_HALO1
Tryptophan synthase alpha chain {ECO:0000313|EMBL:AKF03106.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source=
SpoIID/LytB domain-containing protein
DolJOral78_scaffold_676_3
unknown

Not on your lists

comp(2197..2778)
DNA (582bp) protein (194aa)

This feature has no annotations

DolJOral78_scaffold_676_4
unknown

Not on your lists

3111..3917
DNA (807bp) protein (269aa)

This feature has no annotations

DolJOral78_scaffold_676_5
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4011..5909
DNA (1899bp) protein (633aa)
Serine/threonine protein kinase Pkn6 n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PPZ8_9DELT
Serine/threonine protein kinase Pkn6 {ECO:0000313|EMBL:EPX64547.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.
pkn6; serine/threonine protein kinase
DolJOral78_scaffold_676_6
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5955..7379
DNA (1425bp) protein (475aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PPY9_9DELT rbh
Response regulator of zinc sigma-54-dependent two-component system {ECO:0000313|EMBL:AKF10062.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sanda
Fis family transcriptional regulator
DolJOral78_scaffold_676_7
unknown

Not on your lists

7477..7578
DNA (102bp) protein (34aa)

This feature has no annotations

DolJOral78_scaffold_676_8
unknown

Not on your lists

comp(7742..9052)
DNA (1311bp) protein (437aa)

This feature has no annotations

DolJOral78_scaffold_676_9
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9374..10348
DNA (975bp) protein (325aa)
Diacylglycerol kinase catalytic region n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LGX1_HALO1
diacylglycerol kinase
Diacylglycerol kinase catalytic region {ECO:0000313|EMBL:ACY14693.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" sou
DolJOral78_scaffold_676_10
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10345..12096
DNA (1752bp) protein (584aa)
Apolipoprotein N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148, ECO:0000256|SAAS:SAAS00250216}; Short=ALP N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148};; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF
Apolipoprotein N-acyltransferase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LGX0_HALO1 rbh
apolipoprotein N-acyltransferase
DolJOral78_scaffold_676_11
unknown

Not on your lists

12151..15222
DNA (3072bp) protein (1024aa)
transcriptional regulator n=1 Tax=actinobacterium SCGC AAA024-D14 RepID=UPI00037A26FF
DolJOral78_scaffold_676_12
unknown

Not on your lists

comp(15557..16768)
DNA (1212bp) protein (404aa)

This feature has no annotations

DolJOral78_scaffold_676_13
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

16944..17912
DNA (969bp) protein (323aa)
asparaginase (EC:3.5.1.1)
Asparaginase {ECO:0000313|EMBL:ABX05149.1}; EC=3.5.1.1 {ECO:0000313|EMBL:ABX05149.1};; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;
Asparaginase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AZK5_HERA2 rbh
DolJOral78_scaffold_676_14
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17922..18551
DNA (630bp) protein (210aa)
Putative uncharacterized protein AlNc14C2G325 n=1 Tax=Albugo laibachii Nc14 RepID=F0VZI7_9STRA
hypothetical protein Tax=RifOxyA12_full_Proteobacteria_58_15_curated
Lysine exporter protein (LYSE/YGGA)
DolJOral78_scaffold_676_15

Not on your lists

18904..19839
DNA (936bp) protein (312aa)
malate dehydrogenase (EC:1.1.1.37); K00024 malate dehydrogenase [EC:1.1.1.37] id=16790228 bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate rbh
mdh; malate dehydrogenase (EC:1.1.1.37)
Marine sediment metagenome DNA, contig: S06H3_L00247 {ECO:0000313|EMBL:GAI06238.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
DolJOral78_scaffold_676_16
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19839..21041
DNA (1203bp) protein (401aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558};
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJK9_9DELT rbh
succinyl-CoA synthetase subunit beta
DolJOral78_scaffold_676_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

21038..21907
DNA (870bp) protein (290aa)
sucD; succinyl-CoA synthetase subunit alpha (EC:6.2.1.5); K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MGM1_CORCM
sucD; succinyl-CoA synthetase subunit alpha
DolJOral78_scaffold_676_18
Chlorobaculum tepidum, Chlorobaculum, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

22383..22706
DNA (324bp) protein (108aa)
Response regulator n=1 Tax=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) RepID=Q8KAU3_CHLTE
response regulator
Response regulator {ECO:0000313|EMBL:AAM73276.1}; TaxID=194439 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobaculum.;" source="Chlorobium tepidum (strain ATCC 49652 / DSM
DolJOral78_scaffold_676_19
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23029..24147
DNA (1119bp) protein (373aa)
3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] Tax=CG_Delta_07
3-dehydroquinate synthase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5V1X3_ROSS1
3-dehydroquinate synthase
DolJOral78_scaffold_676_20
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24147..26846
DNA (2700bp) protein (900aa)
3-dehydroquinate dehydratase (EC:4.2.1.10); K03785 3-dehydroquinate dehydratase I [EC:4.2.1.10] Tax=CG_Delta_07
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPZ9_9DELT
DolJOral78_scaffold_676_21
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26843..27400
DNA (558bp) protein (186aa)
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] Tax=CG_Delta_07
shikimate kinase II (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C6X0_9PLAN
DolJOral78_scaffold_676_22
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27397..28719
DNA (1323bp) protein (441aa)
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] Tax=CG_Delta_07
Chorismate synthase n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QLY7_DESB2 id=5225778 bin=16ft_combo_ws3_JS1 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade rbh
Chorismate synthase
DolJOral78_scaffold_676_23
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28796..29614)
DNA (819bp) protein (273aa)
FliR/MopE/SpaR family protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U5L7_MYXSD
FliR/MopE/SpaR family protein
FliR/MopE/SpaR family protein {ECO:0000313|EMBL:AGC44156.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="
DolJOral78_scaffold_676_24
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29621..29887)
DNA (267bp) protein (89aa)
Bacterial export protein FliQ, family 3 n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08UP3_STIAD
bacterial export protein fliq, family 3
UPI00028AC96B related cluster Tax=S_Thermoanaerobacterales_50_218
DolJOral78_scaffold_676_25
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29981..30922)
DNA (942bp) protein (314aa)
Type III secretion apparatus protein, YscR/HrcR family n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08UP4_STIAD
type III secretion system inner membrane p family protein
Type III secretion apparatus protein, YscR/HrcR family {ECO:0000313|EMBL:EAU64219.1}; Type III secretion system inner membrane P family protein {ECO:0000313|EMBL:ADO70838.1}; TaxID=378806 species="Bac
DolJOral78_scaffold_676_26
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30906..31370)
DNA (465bp) protein (155aa)
Uncharacterized protein {ECO:0000313|EMBL:AKF08752.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandara
Putative uncharacterized protein id=3173819 bin=GWB1_Spirochaetales_60_80 species=Treponema brennaborense genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes
DolJOral78_scaffold_676_27
unknown

Not on your lists

comp(31598..33001)
DNA (1404bp) protein (468aa)

This feature has no annotations

DolJOral78_scaffold_676_28
Enhygromyxa salina, Enhygromyxa, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(33567..34001)
DNA (435bp) protein (145aa)
50S ribosomal protein L17 n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GCF4_9DELT
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=215803 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Enhygromyxa.;" source="En
50S ribosomal protein L17
DolJOral78_scaffold_676_29
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34109..35167)
DNA (1059bp) protein (353aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
DNA-directed RNA polymerase subunit alpha n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LI99_HALO1 rbh
DNA-directed RNA polymerase subunit alpha
DolJOral78_scaffold_676_30
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(35254..35880)
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LIA0_HALO1 rbh
30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Halia
Displaying items 1-30 of 56 in total

View Taxonomy