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rifcsphigho2_01_scaffold_2447

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_2447_1
R_OD1_Wolfebacteria_45_10c, Wolfebacteria, Parcubacteria, Bacteria

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1..1122
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037379FA
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_OD1_Wolfebacteria_45_10c_curated
parallel beta-helix repeat-containing protein
rifcsphigho2_01_scaffold_2447_2
R_OD1_Wolfebacteria_45_10c, Wolfebacteria, Parcubacteria, Bacteria

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1286..4231
DNA (2946bp) protein (982aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000375BB90
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_OD1_Wolfebacteria_45_10c_curated
Surface layer protein B SlgB-2
rifcsphigho2_01_scaffold_2447_3

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4228..5556
DNA (1329bp) protein (443aa)
hypothetical protein; K06915 id=5048473 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45507.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_01_scaffold_2447_4
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(5548..6381)
DNA (834bp) protein (278aa)
hypothetical protein; K15429 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RBG_13_Woesearchaeota_36_6_curated
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000376F0A7
hypothetical protein
rifcsphigho2_01_scaffold_2447_5
unknown

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comp(6378..7391)
DNA (1014bp) protein (338aa)
Flap endonuclease 1 n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AGN5_PYRYC id=5103204 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Flap endonuclease 1 n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AGN5_PYRYC Tax=AR20
Flap endonuclease 1
rifcsphigho2_01_scaffold_2447_6

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7463..8095
DNA (633bp) protein (211aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF62483.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
id=5103202 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsphigho2_01_scaffold_2447_7
AR18, Woesearchaeaota, DPANN, Archaea

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8118..8996
DNA (879bp) protein (293aa)
methionine aminopeptidase, type II (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] id=5048875 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
methionine aminopeptidase, type II (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=AR18
Methionine aminopeptidase
rifcsphigho2_01_scaffold_2447_8
unknown

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comp(9020..9433)
DNA (414bp) protein (138aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2447_9
unknown

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comp(9444..11723)
DNA (2280bp) protein (760aa)
AAA family ATPase, CDC48 subfamily n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D4W9_METSW id=5103197 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
AAA family ATPase, CDC48 subfamily n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D4W9_METSW Tax=AR20
AAA family ATPase, CDC48 subfamily
rifcsphigho2_01_scaffold_2447_10
unknown

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comp(11760..11891)
DNA (132bp) protein (44aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2447_11

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11989..12615
DNA (627bp) protein (209aa)
DNA repair and recombination protein RadB {ECO:0000256|HAMAP-Rule:MF_00350}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
DNA repair and recombination protein RadB; K04484 DNA repair protein RadB id=5048885 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA repair and recombination protein radB
rifcsphigho2_01_scaffold_2447_12
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(12605..14686)
DNA (2082bp) protein (694aa)
topA; DNA topoisomerase I; K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=CG_Woesearch_02
DNA topoisomerase 1 n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=TOP1_PYRHO id=5103194 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA topoisomerase 1
rifcsphigho2_01_scaffold_2447_13
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(14731..15330)
DNA (600bp) protein (200aa)
Metallophosphoesterase
metallophosphoesterase Tax=CG_Woesearch_02
Ser/Thr protein phosphatase family protein id=5048113 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_01_scaffold_2447_14

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comp(15361..16185)
DNA (825bp) protein (275aa)
undecaprenyl diphosphate synthase (EC:2.5.1.31); K15888 tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] id=5048456 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.89 {ECO:0000256|HAMAP-Rule:MF_01139};; Undecaprenyl diphosphate synt
Tritrans,polycis-undecaprenyl-diphosphate synthase, geranylgeranyl-diphosphate specific
rifcsphigho2_01_scaffold_2447_15
AR18, Woesearchaeaota, DPANN, Archaea

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16252..16524
DNA (273bp) protein (91aa)
regulatory protein MarR id=5046824 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
regulatory protein MarR Tax=AR18
hypothetical protein
rifcsphigho2_01_scaffold_2447_16
AR15, Woesearchaeaota, DPANN, Archaea

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16530..16850
DNA (321bp) protein (107aa)
seg id=5799943 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
seg Tax=AR15
rifcsphigho2_01_scaffold_2447_17

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comp(16813..17136)
DNA (324bp) protein (108aa)
Toprim protein
TOPRIM domain-containing protein id=5050201 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
TOPRIM protein {ECO:0000313|EMBL:KHO44982.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsphigho2_01_scaffold_2447_18

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17209..17910
DNA (702bp) protein (234aa)
Putative uncharacterized protein n=1 Tax=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) RepID=D5EAK5_METMS id=5103592 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF62873.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_2447_19

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comp(17992..18525)
DNA (534bp) protein (178aa)
integral membrane transport protein; K01975 2'-5' RNA ligase [EC:6.5.1.-] id=5046832 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=1579376 species="A
2'-5' RNA ligase
rifcsphigho2_01_scaffold_2447_20
AR18, Woesearchaeaota, DPANN, Archaea

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comp(18522..19649)
DNA (1128bp) protein (376aa)
proteasome-activating nucleotidase; K03420 proteasome regulatory subunit id=5046833 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
proteasome-activating nucleotidase; K03420 proteasome regulatory subunit Tax=AR18
proteasome-activating nucleotidase
rifcsphigho2_01_scaffold_2447_21
AR17, Woesearchaeaota, DPANN, Archaea

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comp(19715..20845)
DNA (1131bp) protein (377aa)
tyrosyl-tRNA synthetase; K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1] Tax=AR17
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Thermococcus sibiricus (strain MM 739 / DSM 12597) RepID=SYY_THESM
rifcsphigho2_01_scaffold_2447_22

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20896..21246
DNA (351bp) protein (117aa)
hypothetical protein
id=5103098 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:AJF62379.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_2447_23

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21248..22453
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037B1CCA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF62377.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_2447_24

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comp(22450..25929)
DNA (3480bp) protein (1160aa)
DNA polymerase II large subunit {ECO:0000256|HAMAP-Rule:MF_00324}; Short=Pol II {ECO:0000256|HAMAP-Rule:MF_00324};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00324};; TaxID=1579378 species="Archaea.;" sou
DNA polymerase II large subunit n=1 Tax=nanoarchaeote Nst1 RepID=R1E5T5_9ARCH id=5103156 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA polymerase II large subunit
rifcsphigho2_01_scaffold_2447_25
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(25913..27388)
DNA (1476bp) protein (492aa)
DNA polymerase II small subunit (EC:2.7.7.7); K02323 DNA polymerase II small subunit [EC:2.7.7.7] Tax=CG_Woesearch_02
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037FB5DB
hypothetical protein
rifcsphigho2_01_scaffold_2447_26
unknown

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comp(27385..28596)
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037374F8
ORC1-type DNA replication protein n=1 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QF40_9EURY Tax=AR20
ORC1-type DNA replication protein
rifcsphigho2_01_scaffold_2447_27
unknown

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29092..29409
DNA (318bp) protein (106aa)

This feature has no annotations

rifcsphigho2_01_scaffold_2447_28

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29387..29659
DNA (273bp) protein (91aa)
PRC-barrel domain protein n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGN0_9EURY id=5103159 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
PRC-barrel protein
PRC-barrel protein {ECO:0000313|EMBL:AJF62440.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_2447_29
AR17, Woesearchaeaota, DPANN, Archaea

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29729..31582
DNA (1854bp) protein (618aa)
ATP-dependent protease Lon; K04076 Lon-like ATP-dependent protease [EC:3.4.21.-] Tax=AR17
ATP-dependent protease Lon n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HMZ6_PYRSN id=5103160 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
ATP-dependent protease Lon
rifcsphigho2_01_scaffold_2447_30

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comp(31574..31834)
DNA (261bp) protein (87aa)
Marine sediment metagenome DNA, contig: S01H1_S15555 {ECO:0000313|EMBL:GAG20544.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Displaying items 1-30 of 55 in total

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