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rifcsphigho2_01_scaffold_25368

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_25368_1
unknown

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comp(3..101)
DNA (99bp) protein (33aa)

This feature has no annotations

rifcsphigho2_01_scaffold_25368_2
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(114..572)
DNA (459bp) protein (153aa)
rpl30p; 50S ribosomal protein L30P; K02907 large subunit ribosomal protein L30 Tax=CG_Woesearch_01
50S ribosomal protein L30P id=5800042 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rpl30p; 50S ribosomal protein L30
rifcsphigho2_01_scaffold_25368_3
AR9, Woesearchaeaota, DPANN, Archaea

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comp(584..1453)
DNA (870bp) protein (290aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 Tax=AR9
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 id=5042321 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S5
rifcsphigho2_01_scaffold_25368_4

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comp(1485..2111)
DNA (627bp) protein (209aa)
50S ribosomal protein L18P n=1 Tax=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) RepID=RL18_PYRAR
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl18p; 50S ribosomal protein L18
rifcsphigho2_01_scaffold_25368_5
AR9, Woesearchaeaota, DPANN, Archaea

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comp(2154..2636)
DNA (483bp) protein (161aa)
50S ribosomal protein L19; K02885 large subunit ribosomal protein L19e Tax=AR9
LSU ribosomal protein l19e; K02885 large subunit ribosomal protein L19e id=5042319 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L19e
rifcsphigho2_01_scaffold_25368_6

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comp(2689..3360)
DNA (672bp) protein (224aa)
Large subunit ribosomal protein L32e {ECO:0000313|EMBL:KHO50239.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
50S ribosomal protein L32; K02912 large subunit ribosomal protein L32e id=5042318 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L32e
rifcsphigho2_01_scaffold_25368_7

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comp(3365..3907)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035F6817
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS12394.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6
rifcsphigho2_01_scaffold_25368_8
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(3926..4315)
DNA (390bp) protein (130aa)
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=AR9
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 id=5042316 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S8P
rifcsphigho2_01_scaffold_25368_9

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comp(4329..4559)
DNA (231bp) protein (77aa)
hypothetical protein; K02954 small subunit ribosomal protein S14 id=5042315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46813.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
SSU ribosomal protein S14P
rifcsphigho2_01_scaffold_25368_10

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comp(4632..5195)
DNA (564bp) protein (188aa)
Large subunit ribosomal protein L5 {ECO:0000313|EMBL:AJS12039.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=5042314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5
rifcsphigho2_01_scaffold_25368_11

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comp(5213..5908)
DNA (696bp) protein (232aa)
30S ribosomal protein S4e {ECO:0000256|HAMAP-Rule:MF_00485}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
rps4e; 30S ribosomal protein S4e; K02987 small subunit ribosomal protein S4e id=5041771 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rps4e; 30S ribosomal protein S4e
rifcsphigho2_01_scaffold_25368_12

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comp(5913..6392)
DNA (480bp) protein (160aa)
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 id=5042312 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rpl24p; 50S ribosomal protein L24
rifcsphigho2_01_scaffold_25368_13

Not on your lists


comp(6474..6875)
DNA (402bp) protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L14P id=5800053 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L14P
rifcsphigho2_01_scaffold_25368_14

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comp(6872..7276)
DNA (405bp) protein (135aa)
30S ribosomal protein S17P n=2 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=RS17_PYRHO
30S ribosomal protein S17P {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps17p; 30S ribosomal protein S17
rifcsphigho2_01_scaffold_25368_15
AR9, Woesearchaeaota, DPANN, Archaea

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comp(7381..7629)
DNA (249bp) protein (83aa)
ribonuclease P, Rpp29; K03538 ribonuclease P protein subunit POP4 [EC:3.1.26.5] Tax=AR9
Ribonuclease P protein component 1 n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RE58_ARCPA
ribonuclease P, Rpp29
rifcsphigho2_01_scaffold_25368_16

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comp(7668..7973)
DNA (306bp) protein (102aa)
Protein translation factor SUI1 homolog n=1 Tax=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) RepID=SUI1_METST
Protein translation factor SUI1 homolog {ECO:0000256|HAMAP-Rule:MF_00604, ECO:0000256|PIRNR:PIRNR037511}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
translation initiation factor Sui1
rifcsphigho2_01_scaffold_25368_17
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(7980..8177)
DNA (198bp) protein (66aa)
50S ribosomal protein L29 n=1 Tax=Methanothermococcus thermolithotrophicus RepID=UPI000379B164
50S ribosomal protein L29
Tax=AR9
Displaying 17 items

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