ggKbase home page

RIFCSPHIGHO2_02_FULL_Archaea_Woesearchaeota_33_21

RIFCSPHIGHO2_02_FULL_unknown_33_21

Consensus taxonomy:

Taxonomy override: Woesearchaeota

Displaying items 51-72 of 72 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
rifcsphigho2_02_scaffold_35468 12 11396 bp 32.22 22.39 91.03
rifcsphigho2_02_scaffold_10247 12 12420 bp 32.71 21.40 87.27
rifcsphigho2_02_scaffold_18408 11 9057 bp 33.25 20.60 83.90
rifcsphigho2_02_scaffold_22181
Domain: Archaea (50%)
10 8750 bp 34.43 21.45 75.22
rifcsphigho2_02_scaffold_13949
Domain: Archaea (55.56%)
9 10322 bp 33.47 20.16 87.28
rifcsphigho2_02_scaffold_1182 9 39137 bp 35.21 20.42 94.92
rifcsphigho2_02_scaffold_20995 9 8039 bp 33.45 21.36 83.63
rifcsphigho2_02_scaffold_16394
Domain: Archaea (77.78%)
9 9375 bp 35.20 22.05 77.76
rifcsphigho2_02_scaffold_26657
Domain: Bacteria (55.56%)
9 6932 bp 35.23 23.35 80.93
rifcsphigho2_02_scaffold_5682 8 17350 bp 33.49 21.20 91.68
rifcsphigho2_02_scaffold_19120 7 8527 bp 33.61 19.93 87.64
rifcsphigho2_02_scaffold_22128
Domain: Archaea (57.14%)
7 7780 bp 32.62 22.10 79.34
rifcsphigho2_02_scaffold_34367 7 5920 bp 34.21 21.46 79.31
rifcsphigho2_02_scaffold_26820 7 7802 bp 33.80 22.15 81.56
rifcsphigho2_02_scaffold_31176 7 7145 bp 33.86 20.83 79.99
rifcsphigho2_02_scaffold_23832
Domain: Archaea (57.14%)
7 7435 bp 33.32 21.65 75.90
rifcsphigho2_02_scaffold_50357 7 6391 bp 32.81 21.69 76.42
rifcsphigho2_02_scaffold_21282
Domain: Archaea (66.67%)
6 7975 bp 32.21 24.70 75.20
rifcsphigho2_02_scaffold_31293
Domain: Archaea (66.67%)
6 6272 bp 33.77 20.23 79.02
rifcsphigho2_02_scaffold_143857 5 6769 bp 31.82 19.94 100.12
rifcsphigho2_02_scaffold_26082 5 9564 bp 35.11 18.52 80.77
rifcsphigho2_02_scaffold_36824 4 5665 bp 34.39 20.18 77.02
Displaying items 51-72 of 72 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.