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rifcsphigho2_02_scaffold_11960

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_11960_1
AR4, Woesearchaeaota, DPANN, Archaea

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545..832
DNA (288bp) protein (96aa)
rpl37ae; 50S ribosomal protein L37; K02921 large subunit ribosomal protein L37Ae id=5044064 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rpl37ae; 50S ribosomal protein L37; K02921 large subunit ribosomal protein L37Ae Tax=AR4
50S ribosomal protein L37Ae
rifcsphigho2_02_scaffold_11960_2
unknown

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967..1197
DNA (231bp) protein (77aa)

This feature has no annotations

rifcsphigho2_02_scaffold_11960_3
CG_Woesearch_02, Woesearchaeota, Archaea

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1190..1525
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000371FCFD
prefoldin subunit beta; K04798 prefoldin beta subunit Tax=CG_Woesearch_02
Prefoldin subunit beta
rifcsphigho2_02_scaffold_11960_4

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1527..1787
DNA (261bp) protein (87aa)
Uncharacterized protein conserved in archaea id=5799820 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF61151.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
rifcsphigho2_02_scaffold_11960_5
CG_Woesearch_02, Woesearchaeota, Archaea

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2012..2689
DNA (678bp) protein (226aa)
hypothetical protein Tax=CG_Woesearch_02
hypothetical protein id=5045855 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_11960_6
CG_Pacearch_04, Pacearchaeota, Archaea

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2940..3119
DNA (180bp) protein (60aa)
Transcription factor CBF/NF-Y/histone domain-containing protein n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TB06_METSL
archaeal histone Tax=CG_Pacearch_04
transcription factor CBF/NF-Y/histone domain-containing protein
rifcsphigho2_02_scaffold_11960_7

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3185..3580
DNA (396bp) protein (132aa)
Marine sediment metagenome DNA, contig: S01H1_S10434 {ECO:0000313|EMBL:GAG01596.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Translation initiation factor 5A id=5800376 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Translation initiation factor 5A
rifcsphigho2_02_scaffold_11960_8
CG_Woesearch_02, Woesearchaeota, Archaea

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3596..3757
DNA (162bp) protein (54aa)
hypothetical protein
id=5800377 Tax=CG_Woesearch_02
id=5800377 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_11960_9
AR11, Woesearchaeaota, DPANN, Archaea

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3765..5105
DNA (1341bp) protein (447aa)
serine protease htra related protein Tax=AR11
peptidase m50 id=5050972 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
membrane-associated Zn-dependent protease
rifcsphigho2_02_scaffold_11960_10
unknown

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comp(5087..5206)
DNA (120bp) protein (40aa)

This feature has no annotations

rifcsphigho2_02_scaffold_11960_11
CG_Woesearch_01, Woesearchaeota, Archaea

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5375..6076
DNA (702bp) protein (234aa)
TrmH family RNA methyltransferase, group 1 Tax=CG_Woesearch_01
RNA methyltransferase, TrmH family, group 1 id=5800379 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_11960_12
unknown

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6183..6464
DNA (282bp) protein (94aa)

This feature has no annotations

rifcsphigho2_02_scaffold_11960_13
unknown

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comp(6469..7860)
DNA (1392bp) protein (464aa)

This feature has no annotations

rifcsphigho2_02_scaffold_11960_14
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

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comp(7811..8593)
DNA (783bp) protein (261aa)
RHS repeat-associated core domain-containing protein Tax=GWA2_WOR_2_47_8_curated
phosphate/sulfate permease id=2175382 bin=GWA2_Bacteroidetes_42_15 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
rifcsphigho2_02_scaffold_11960_15
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(8595..8918)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VWU3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ENO12384.1}; TaxID=1242690 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-539-C06.;"
rifcsphigho2_02_scaffold_11960_16
GWC1_OD1_38_17, Parcubacteria, Bacteria

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9463..10053
DNA (591bp) protein (197aa)
id=3506661 bin=GWC1_OD1_38_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
Uncharacterized protein {ECO:0000313|EMBL:KKQ58601.1}; TaxID=1618896 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_38_17.;"
rifcsphigho2_02_scaffold_11960_17
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(10312..11340)
DNA (1029bp) protein (343aa)
IS66 family element, transposase n=1 Tax=Methanoplanus limicola DSM 2279 RepID=H1Z2R1_9EURY
transposase IS66 family Tax=CG_Woesearch_01
transposase IS66 family
Displaying 17 items

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