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rifcsphigho2_02_scaffold_1534

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_1534_1
unknown

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2..1084
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Streptomyces canus RepID=UPI000366226B
rifcsphigho2_02_scaffold_1534_2

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1139..2080
DNA (942bp) protein (314aa)
Marine sediment metagenome DNA, contig: S01H1_S28721 {ECO:0000313|EMBL:GAG40087.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifcsphigho2_02_scaffold_1534_3
R_OD1_Uhrbacteria_63_20, Uhrbacteria, Parcubacteria, Bacteria

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2109..3212
DNA (1104bp) protein (368aa)
Uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Uhrbacteria_63_20_curated
Uncharacterized protein id=5226895 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
rifcsphigho2_02_scaffold_1534_4
AR4, Woesearchaeaota, DPANN, Archaea

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3537..3965
DNA (429bp) protein (143aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23); K01520 dUTP pyrophosphatase [EC:3.6.1.23] id=5044055 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23); K01520 dUTP pyrophosphatase [EC:3.6.1.23] Tax=AR4
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
rifcsphigho2_02_scaffold_1534_5
unknown

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3981..4082
DNA (102bp) protein (34aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1534_6
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

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4160..4519
DNA (360bp) protein (120aa)
hypothetical protein Tax=GWA2_OD1_31_28_partial
rifcsphigho2_02_scaffold_1534_7
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

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4535..5152
DNA (618bp) protein (206aa)
hypothetical protein id=14624238 bin=bin5_DeltaP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=candidate division DUSEL4 tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein Tax=CSP1_8_Deltaproteobacteria
hypothetical protein
rifcsphigho2_02_scaffold_1534_8
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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5179..5778
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036B8932
hexapaptide repeat-containing transferase
Hexapaptide repeat-containing transferase {ECO:0000313|EMBL:ACV47797.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomic
rifcsphigho2_02_scaffold_1534_9
RIFOXYB1_FULL_OD1_Moranbacteria_44_23_curated, Moranbacteria, Parcubacteria, Bacteria

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5775..7277
DNA (1503bp) protein (501aa)
phosphoenolpyruvate synthase; K01007 pyruvate, water dikinase [EC:2.7.9.2] Tax=RIFOXYB1_FULL_OD1_Moranbacteria_44_23_curated
Phosphoenolpyruvate synthase n=1 Tax=uncultured bacterium RepID=K2FYL8_9BACT
phosphoenolpyruvate synthase
rifcsphigho2_02_scaffold_1534_10
RLO_OD1_Moranbacteria_48_12, Moranbacteria, Parcubacteria, Bacteria

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7274..8662
DNA (1389bp) protein (463aa)
ppsA; phosphoenolpyruvate synthase (EC:2.7.9.2); K01007 pyruvate, water dikinase [EC:2.7.9.2] id=5044191 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
phosphoenolpyruvate synthase (EC:2.7.9.2)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Moranbacteria_48_12_curated
rifcsphigho2_02_scaffold_1534_11
R_OD1_Falkowbacteria_39_8, Falkowbacteria, Parcubacteria, Bacteria

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8659..10116
DNA (1458bp) protein (486aa)
phosphoenolpyruvate synthase; K01007 pyruvate, water dikinase [EC:2.7.9.2] Tax=RIFCSPHIGHO2_01_FULL_OD1_Falkowbacteria_39_8_curated
Phosphoenolpyruvate synthase/pyruvate phosphate dikinase id=2916258 bin=GWC1_CPR2_39_9 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
phosphoenolpyruvate synthase
rifcsphigho2_02_scaffold_1534_12
RIFOXYB1_FULL_RIF_OD1_07_40_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

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10187..11878
DNA (1692bp) protein (564aa)
phosphoenolpyruvate synthase; K01007 pyruvate, water dikinase [EC:2.7.9.2] Tax=RIFOXYB1_FULL_RIF_OD1_07_40_15_curated
phosphoenolpyruvate synthase (EC:2.7.9.2)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2B2Y7_9BACT
rifcsphigho2_02_scaffold_1534_13
zPERA2_38_36, Peregrinibacteria, Bacteria

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11931..12923
DNA (993bp) protein (331aa)
phosphate acetyltransferase; K00625 phosphate acetyltransferase [EC:2.3.1.8] id=5802764 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
Phosphate acetyltransferase Tax=zPERA2_38_36
eutD; phosphotransacetylase
rifcsphigho2_02_scaffold_1534_14
GWF2_OD1_45_11, Parcubacteria, Bacteria

Not on your lists

12933..14489
DNA (1557bp) protein (519aa)
phosphoenolpyruvate synthase (EC:2.7.9.2); K01007 pyruvate, water dikinase [EC:2.7.9.2] id=86218 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Phosphoenolpyruvate synthase/pyruvate phosphate dikinase {ECO:0000313|EMBL:KKT93986.1}; TaxID=1618973 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_45_11.;"
Phosphoenolpyruvate synthase
rifcsphigho2_02_scaffold_1534_15
R_OD1_Uhrbacteria_47_25, Uhrbacteria, Parcubacteria, Bacteria

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14550..16262
DNA (1713bp) protein (571aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Uhrbacteria_47_25_curated
Phosphoenolpyruvate synthase/pyruvate phosphate dikinase id=2916258 bin=GWC1_CPR2_39_9 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
phosphoenolpyruvate synthase
rifcsphigho2_02_scaffold_1534_16
RBG_16_OP11_44_10_curated, Microgenomates, Bacteria

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16269..17699
DNA (1431bp) protein (477aa)
phosphoenolpyruvate synthase; K01007 pyruvate, water dikinase [EC:2.7.9.2] Tax=RBG_16_OP11_44_10_curated
phosphoenolpyruvate synthase n=1 Tax=Methanobrevibacter smithii RepID=UPI00035FBD5F
phosphoenolpyruvate synthase
rifcsphigho2_02_scaffold_1534_17
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

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17755..18357
DNA (603bp) protein (201aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Clostridium sp. DL-VIII RepID=G7M3U4_9CLOT
HAD family hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
HAD-superfamily hydrolase
rifcsphigho2_02_scaffold_1534_18
unknown

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18686..19714
DNA (1029bp) protein (343aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1534_19
GWA2_OD1_31_28_partial, Parcubacteria, Bacteria

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comp(19711..20331)
DNA (621bp) protein (207aa)
dTMP kinase (EC:2.7.4.9)
thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9] id=5241644 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Putative thymidylate kinase {ECO:0000313|EMBL:KKP27107.1}; TaxID=1618806 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_31_28.;"
rifcsphigho2_02_scaffold_1534_20
unknown

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comp(20373..20945)
DNA (573bp) protein (191aa)

This feature has no annotations

rifcsphigho2_02_scaffold_1534_21

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comp(21000..21233)
DNA (234bp) protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:AJF61052.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
UPF0235 protein MSWAN_0547 id=5799721 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_1534_22
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(21217..21858)
DNA (642bp) protein (214aa)
pcm; protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77); K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] Tax=CG_Woesearch_02
protein-L-isoaspartate (D-aspartate) O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3P9G1_DEFDS
rifcsphigho2_02_scaffold_1534_23

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comp(22117..22434)
DNA (318bp) protein (106aa)
DNA-directed RNA polymerase subunit {ECO:0000256|PIRNR:PIRNR005586}; EC=2.7.7.6 {ECO:0000256|PIRNR:PIRNR005586};; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
DNA-directed RNA polymerase subunit id=5799719 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Transcription-associated protein TFIIS
rifcsphigho2_02_scaffold_1534_24

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comp(22642..23250)
DNA (609bp) protein (203aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO51034.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Peptidase S26B, eukaryotic signal peptidase id=5043727 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_1534_25

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23302..23742
DNA (441bp) protein (147aa)
Nonsense-mediated mRNA decay protein 3 {ECO:0000313|EMBL:KHO51433.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
Predicted nonsense mediated mRNA decay protein id=5800424 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_1534_26

Not on your lists

comp(23734..24903)
DNA (1170bp) protein (390aa)
hypothetical protein; K09150 hypothetical protein id=5043729 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO47045.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
hypothetical protein
rifcsphigho2_02_scaffold_1534_27
Methanocella paludicola, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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25147..25533
DNA (387bp) protein (129aa)
Riboflavin kinase {ECO:0000256|HAMAP-Rule:MF_01285}; Short=RFK {ECO:0000256|HAMAP-Rule:MF_01285};; EC=2.7.1.161 {ECO:0000256|HAMAP-Rule:MF_01285};; CTP-dependent riboflavin kinase {ECO:0000256|HAMAP-R
Riboflavin kinase n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z219_METPS
hypothetical protein
rifcsphigho2_02_scaffold_1534_28
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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25620..26105
DNA (486bp) protein (162aa)
ribC; riboflavin synthase subunit alpha (EC:2.5.1.-)
Riboflavin synthase {ECO:0000256|PIRNR:PIRNR015750}; EC=2.5.1.9 {ECO:0000256|PIRNR:PIRNR015750};; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Met
Riboflavin synthase n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IAL4_METCZ
rifcsphigho2_02_scaffold_1534_29

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26331..26735
DNA (405bp) protein (135aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9 2.5.1.78)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] id=5241328 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00
rifcsphigho2_02_scaffold_1534_30
AR11, Woesearchaeaota, DPANN, Archaea

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comp(26732..27496)
DNA (765bp) protein (255aa)
id=5042250 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Tax=AR11
Displaying items 1-30 of 45 in total

View Taxonomy