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S36_SO-2_scaffold_134014

Search features with annotation key words

Displaying items 1-30 of 272 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S36_SO-2_scaffold_134014_1

Not on your lists

comp(1..126)
DNA (126bp) protein (42aa)
prophage antirepressor id=5045949 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Prophage antirepressor {ECO:0000313|EMBL:KHO46294.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
S36_SO-2_scaffold_134014_2
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

390..692
DNA (303bp) protein (101aa)
Putative uncharacterized protein id=2227596 bin=GWB2_Nitrospirae_rel_47_37 species=Rhizobium sp. genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_42_7_curated
S36_SO-2_scaffold_134014_3

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683..1060
DNA (378bp) protein (126aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT02880.1}; TaxID=1618827 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_43_17.;"
Uncharacterized protein id=2087718 bin=GWD2_Deltaproteobacteria_55_8 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
regulatory protein ArsR
S36_SO-2_scaffold_134014_4
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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1110..2915
DNA (1806bp) protein (602aa)
DEAD_2 domain protein; K10844 DNA excision repair protein ERCC-2 [EC:3.6.4.12] id=5043688 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
ATP dependent helicase
Tax=RBG_13_Woesearchaeota_36_6_curated
S36_SO-2_scaffold_134014_5
Methanosarcina sp. 1.H.T.1A.1, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2919..3224)
DNA (306bp) protein (102aa)
Integral membrane protein n=2 Tax=Methanosarcina mazei RepID=Q8PYA0_METMA
TspO and MBR {ECO:0000313|EMBL:KKH92648.1}; TaxID=1483602 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 1.H.T.1A.1.;"
hypothetical protein
S36_SO-2_scaffold_134014_6
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

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comp(3429..3908)
DNA (480bp) protein (160aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E9W5_METEZ
Tax=RBG_13_RIF03_48_7_curated
S36_SO-2_scaffold_134014_7
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

4086..5342
DNA (1257bp) protein (419aa)
Replication factor C large subunit id=5799900 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
replication factor C large subunit
Tax=CG_Woesearch_01
S36_SO-2_scaffold_134014_8
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5349..5543)
DNA (195bp) protein (65aa)
Cold shock DNA binding domain protein n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BUS9_METCG
cold shock DNA binding domain-containing protein
Cold shock DNA binding domain protein {ECO:0000313|EMBL:AEB68319.1}; TaxID=990316 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC; 103675 / OCM 69 / GP-6) (Methanothrix concilii).;"
S36_SO-2_scaffold_134014_9
unknown

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comp(5548..5709)
DNA (162bp) protein (54aa)

This feature has no annotations

S36_SO-2_scaffold_134014_10

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5826..7367
DNA (1542bp) protein (514aa)
Glycyl-tRNA synthetase (EC:6.1.1.14)
Glycyl-tRNA synthetase {ECO:0000313|EMBL:KHO52157.1}; Flags: Fragment;; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Glycyl-tRNA synthetase id=5799897 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
S36_SO-2_scaffold_134014_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(7745..7945)
DNA (201bp) protein (67aa)
Putative iron sulfur domain-containing protein, CDGSH-type n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKH0_NITGG
iron sulfur domain-containing protein, CDGSH-type
Putative iron sulfur domain-containing protein, CDGSH-type {ECO:0000313|EMBL:AFU59758.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
S36_SO-2_scaffold_134014_12
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

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comp(8008..9054)
DNA (1047bp) protein (349aa)
alcohol dehydrogenase n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AC6F
alcohol dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
S36_SO-2_scaffold_134014_13
unknown

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comp(9168..9752)
DNA (585bp) protein (195aa)

This feature has no annotations

S36_SO-2_scaffold_134014_14
AR9, Woesearchaeaota, DPANN, Archaea

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10302..11642
DNA (1341bp) protein (447aa)
Beta-lactamase domain protein id=5800253 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
RNA-metabolising metallo-beta-lactamase
Tax=AR9
S36_SO-2_scaffold_134014_15
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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11733..12470
DNA (738bp) protein (246aa)
DNA polymerase sliding clamp; K04802 proliferating cell nuclear antigen id=5046287 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA polymerase sliding clamp
Tax=RBG_13_Woesearchaeota_36_6_curated
S36_SO-2_scaffold_134014_16
unknown

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12548..13735
DNA (1188bp) protein (396aa)

This feature has no annotations

S36_SO-2_scaffold_134014_17
CG_Pacearch_01, Pacearchaeota, Archaea

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13909..14841
DNA (933bp) protein (311aa)
Thioredoxin reductase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q187_9FIRM
thioredoxin reductase
Tax=CG_Pacearch_01
S36_SO-2_scaffold_134014_18
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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comp(14842..19410)
DNA (4569bp) protein (1523aa)
hypothetical protein id=5044656 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=RBG_16_Micrarchaeota_36_9_curated
S36_SO-2_scaffold_134014_19
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19591..20766
DNA (1176bp) protein (392aa)
fructose-1,6-bisphosphatase (EC:3.1.3.11); K01622 fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11] id=1250883 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
fructose-1,6-bisphosphatase (EC:3.1.3.11)
Tax=RBG_13_Deltaproteobacteria_61_14_curated
S36_SO-2_scaffold_134014_20
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

20861..21853
DNA (993bp) protein (331aa)
gap; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.59)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00559, ECO:0000256|RuleBase:RU003388}; Short=GAPDH {ECO:0000256|HAMAP-Rule:MF_00559};; EC=1.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00559, ECO:0000256|RuleBase:RU003388};; NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00559}; TaxID=351160 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50).;"
Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W6M9_UNCMA
S36_SO-2_scaffold_134014_21
CG_Woesearch_02, Woesearchaeota, Archaea

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21885..22160
DNA (276bp) protein (92aa)
Tax=CG_Woesearch_02
S36_SO-2_scaffold_134014_22
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

22231..24294
DNA (2064bp) protein (688aa)
serine protease; K06870 uncharacterized protein id=5049207 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
Tax=CG_Woesearch_02
S36_SO-2_scaffold_134014_23
unknown

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24579..25196
DNA (618bp) protein (206aa)

This feature has no annotations

S36_SO-2_scaffold_134014_24
unknown

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25230..25466
DNA (237bp) protein (79aa)

This feature has no annotations

S36_SO-2_scaffold_134014_25
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

25608..26618
DNA (1011bp) protein (337aa)
phospholipase D/transphosphatidylase id=5048109 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
phospholipase D/transphosphatidylase
Tax=CG_Woesearch_02
S36_SO-2_scaffold_134014_26
CG_Elusi_03, Elusimicrobia, Bacteria

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26661..27566
DNA (906bp) protein (302aa)
pfkB-1; putative carbohydrate kinase, pfkB family (EC:2.7.1.15) id=5240851 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
hypothetical protein
Tax=CG_Elusi_03
S36_SO-2_scaffold_134014_27
AR11, Woesearchaeaota, DPANN, Archaea

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27622..28887
DNA (1266bp) protein (422aa)
adenosylhomocysteinase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] id=5048104 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
adenosylhomocysteinase (EC:3.3.1.1)
Tax=AR11
S36_SO-2_scaffold_134014_28
GWB1_OD1_49_9, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(29287..29490)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Glaciecola mesophila KMM 241 RepID=K6Z680_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:KKW11785.1}; TaxID=1618664 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWB1_49_9.;"
hypothetical protein
S36_SO-2_scaffold_134014_29
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(29502..30359)
DNA (858bp) protein (286aa)
hypothetical protein id=5046593 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Tax=CG_Woesearch_01
S36_SO-2_scaffold_134014_30
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(30356..31291)
DNA (936bp) protein (312aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-] id=5046592 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
moxR; methanol dehydrogenase regulatory protein
Tax=CG_Woesearch_01
Displaying items 1-30 of 272 in total

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