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S36_SO-2_scaffold_134014

Search features with annotation key words

Displaying items 211-240 of 272 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S36_SO-2_scaffold_134014_209

Not on your lists

comp(191810..192385)
DNA (576bp) protein (192aa)
Iron-sulfur cluster assembly accessory protein n=2 Tax=Waddlia chondrophila RepID=D6YW49_WADCW id=5103548 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Iron-sulfur cluster assembly accessory protein
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:AJF62829.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
S36_SO-2_scaffold_134014_210

Not on your lists

comp(192419..192673)
DNA (255bp) protein (85aa)
ferredoxin; K05337 ferredoxin id=5048736 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Ferredoxin {ECO:0000313|EMBL:KHO45399.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
4fe-4S ferredoxin IroN-sulfur binding domaiN-containing protein
S36_SO-2_scaffold_134014_211

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comp(192670..193419)
DNA (750bp) protein (250aa)
sufC; putative ATP-dependent transporter SufC; K09013 Fe-S cluster assembly ATP-binding protein id=5046300 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46101.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
sufC; putative ATP-dependent transporter SufC
S36_SO-2_scaffold_134014_212
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(193416..193826)
DNA (411bp) protein (137aa)
SUF system FeS cluster assembly protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE34_NITGG
nifU; SUF system FeS cluster assembly protein
SUF system FeS cluster assembly protein {ECO:0000313|EMBL:AFU58030.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
S36_SO-2_scaffold_134014_213
Geobacillus sp. Y4.1MC1, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(193833..195119)
DNA (1287bp) protein (429aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506};; TaxID=581103 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. (strain Y4.1MC1).;"
Cysteine desulfurase n=2 Tax=Geobacillus RepID=E3IC79_GEOS0
cysteine desulfurase SufS
S36_SO-2_scaffold_134014_214
Haloferax lucentense, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(195132..196415)
DNA (1284bp) protein (428aa)
FeS assembly protein SufD n=3 Tax=Haloferax RepID=M0FJP2_9EURY
sufD; FeS assembly protein SufD
FeS assembly protein SufD {ECO:0000313|EMBL:ELZ72765.1}; TaxID=1230452 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax lucentense (strain DSM 14919 / JCM 9276 / NCIMB 13854 / Aa; 2.2) (Haloferax alicantei).;"
S36_SO-2_scaffold_134014_215
GWA1_Berkelbacteria_36_10, Berkelbacteria, Bacteria

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comp(196438..197850)
DNA (1413bp) protein (471aa)
FeS assembly protein SufB n=4 Tax=Thermoanaerobacterium RepID=D9TMN1_THETC id=5103560 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
FeS assembly protein SufB {ECO:0000313|EMBL:KKQ17612.1}; TaxID=1618331 species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWA1_36_9.;"
FeS assembly protein SufB
S36_SO-2_scaffold_134014_216

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comp(197847..198227)
DNA (381bp) protein (127aa)
hypothetical protein; K07108 id=5048372 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Uncharacterized protein {ECO:0000313|EMBL:KHO45044.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
hypothetical protein
S36_SO-2_scaffold_134014_217
CG_Woesearch_01, Woesearchaeota, Archaea

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198376..199374
DNA (999bp) protein (333aa)
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] id=5045844 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
gap; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.-)
Tax=CG_Woesearch_01
S36_SO-2_scaffold_134014_218
unknown

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199422..200309
DNA (888bp) protein (296aa)

This feature has no annotations

S36_SO-2_scaffold_134014_219
Geitlerinema sp. PCC 7407, Geitlerinema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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200367..201566
DNA (1200bp) protein (400aa)
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1173025 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Geitlerinema.;" source="Geitlerinema sp. PCC 7407.;"
Phosphoglycerate kinase n=1 Tax=Geitlerinema sp. PCC 7407 RepID=K9SDC3_9CYAN
S36_SO-2_scaffold_134014_220
unknown

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201689..203914
DNA (2226bp) protein (742aa)

This feature has no annotations

S36_SO-2_scaffold_134014_221
unknown

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comp(203934..204800)
DNA (867bp) protein (289aa)

This feature has no annotations

S36_SO-2_scaffold_134014_222
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(204892..205218)
DNA (327bp) protein (109aa)
DNA-directed RNA polymerase subunit M n=2 Tax=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) RepID=RPOM_METTH
transcription elongation factor TFIIS
Tax=CG_Woesearch_01
S36_SO-2_scaffold_134014_223
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(205221..205817)
DNA (597bp) protein (199aa)
Peptidase S26B, eukaryotic signal peptidase id=5043727 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
Tax=CG_Woesearch_02
S36_SO-2_scaffold_134014_224
CG_Woesearch_02, Woesearchaeota, Archaea

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205875..206519
DNA (645bp) protein (215aa)
Predicted nonsense mediated mRNA decay protein id=5800424 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
Tax=CG_Woesearch_02
S36_SO-2_scaffold_134014_225
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(206572..206976)
DNA (405bp) protein (135aa)
PilT protein domain protein n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8EA35_9FIRM
PilT protein domain-containing protein
Tax=RBG_16_Deltaproteobacteria_48_10_curated
S36_SO-2_scaffold_134014_226
AR4, Woesearchaeaota, DPANN, Archaea

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comp(206973..207272)
DNA (300bp) protein (100aa)
SpoVT/AbrB family transcription regulator id=5044907 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
SpoVT/AbrB family transcription regulator
Tax=AR4
S36_SO-2_scaffold_134014_227
R_OD1_Falkowbacteria_39_33, Falkowbacteria, Parcubacteria, Bacteria

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207533..209911
DNA (2379bp) protein (793aa)
Glycosyl hydrolase, BNR repeat n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KIQ3_9GAMM
Tax=RIFCSPLOWO2_01_FULL_OD1_Falkowbacteria_39_33_curated
S36_SO-2_scaffold_134014_228
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(210020..211219)
DNA (1200bp) protein (400aa)
Putative fusion protein of n terminal phosphoserine phosphatase and c-terminal phosphatidate cytidylyltransferase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q722_9BACT id=73679 bin=ACD51 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=ACD51 organism_group=PER (Peregrinibacteria) organism_desc=PER
Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
S36_SO-2_scaffold_134014_229
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(211231..212559)
DNA (1329bp) protein (443aa)
CCA-adding enzyme {ECO:0000256|HAMAP-Rule:MF_01264}; EC=2.7.7.72 {ECO:0000256|HAMAP-Rule:MF_01264};; CCA tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA CCA-pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA adenylyl-/cytidylyl- transferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01264}; tRNA-NT {ECO:0000256|HAMAP-Rule:MF_01264}; TaxID=1242690 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-539-C06.;"
CCA-adding enzyme n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6WSV3_9EURY
tRNA nucleotidyltransferase CCA-adding enzyme
S36_SO-2_scaffold_134014_230
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

212675..216169
DNA (3495bp) protein (1165aa)
chromosome segregation ATPase; K03529 chromosome segregation protein id=5044048 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
chromosome segregation protein SMC
Tax=CG_Woesearch_01
S36_SO-2_scaffold_134014_trna_4
unknown

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comp(216207..216280)
DNA (74bp)
transferRNA Phe
S36_SO-2_scaffold_134014_231
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(216305..217489)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SDF2_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ERK86647.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus sp. (contaminant ex DSM 436).;"
arabinose efflux permease
S36_SO-2_scaffold_134014_232
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(217546..217935)
DNA (390bp) protein (130aa)
single-stranded DNA-binding replication protein A, large (70 kD) subunit; K07466 replication factor A1 id=5048480 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
replication factor A1
Tax=CG_Woesearch_01
S36_SO-2_scaffold_134014_trna_3
unknown

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comp(217984..218067)
DNA (84bp)
transferRNA Leu
S36_SO-2_scaffold_134014_233

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comp(218143..218553)
DNA (411bp) protein (137aa)
id=5046267 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46068.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
S36_SO-2_scaffold_134014_234

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comp(218571..218786)
DNA (216bp) protein (72aa)
id=5046266 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46067.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
S36_SO-2_scaffold_134014_235
unknown

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comp(218820..219443)
DNA (624bp) protein (208aa)

This feature has no annotations

S36_SO-2_scaffold_134014_236
unknown

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219608..220417
DNA (810bp) protein (270aa)

This feature has no annotations

Displaying items 211-240 of 272 in total

View Taxonomy