ggKbase home page

AB_1215_Bin_123.fna_scaffold_21705

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AB_1215_Bin_123.fna_scaffold_21705_1
unknown

Not on your lists

2..187
DNA (186bp) protein (62aa)

This feature has no annotations

AB_1215_Bin_123.fna_scaffold_21705_2
unknown

Not on your lists

271..690
DNA (420bp) protein (140aa)

This feature has no annotations

AB_1215_Bin_123.fna_scaffold_21705_3
Methanocella paludicola, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(780..1832)
DNA (1053bp) protein (351aa)
Probable tRNA pseudouridine synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000256|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA pseudouridylate synthase D {ECO:0000256|HAMAP-Rule:MF_01082}; tRNA-uridine isomerase D {ECO:0000256|HAMAP-Rule:MF_01082}; TaxID=304371 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 /; SANAE).;"
Probable tRNA pseudouridine synthase D n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YXS1_METPS
truD; tRNA pseudouridine synthase D
AB_1215_Bin_123.fna_scaffold_21705_4
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1936..2448)
DNA (513bp) protein (171aa)
Putative uncharacterized protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D3C8_METSW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG18720.1}; TaxID=868131 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium paludis (strain DSM 25820 / JCM 18151 / SWAN1).;"
AB_1215_Bin_123.fna_scaffold_21705_5
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

comp(2771..4084)
DNA (1314bp) protein (438aa)
Putative uncharacterized protein id=3606655 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Tax=AR5
AB_1215_Bin_123.fna_scaffold_21705_6
unknown

Not on your lists

comp(4203..5147)
DNA (945bp) protein (315aa)

This feature has no annotations

AB_1215_Bin_123.fna_scaffold_21705_7

Not on your lists

5686..6111
DNA (426bp) protein (142aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO52735.1}; TaxID=1579372 species="Archaea.;" source="archaeon GW2011_AR13.;"
Uncharacterized protein id=18248699 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
AB_1215_Bin_123.fna_scaffold_21705_8
unknown

Not on your lists

comp(6216..7163)
DNA (948bp) protein (316aa)

This feature has no annotations

AB_1215_Bin_123.fna_scaffold_21705_9
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

Not on your lists

comp(7185..7631)
DNA (447bp) protein (149aa)
Putative uncharacterized protein id=3606792 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Tax=RBG_16_Micrarchaeota_36_9_curated
AB_1215_Bin_123.fna_scaffold_21705_10
unknown

Not on your lists

comp(8047..8199)
DNA (153bp) protein (51aa)

This feature has no annotations

AB_1215_Bin_123.fna_scaffold_21705_11
Drosophila virilis, Drosophila, Diptera, Neoptera, Arthropoda, Metazoa

Not on your lists

8967..10445
DNA (1479bp) protein (493aa)
Chromosome undetermined scaffold_405, whole genome shotgun sequence. (Fragment) n=1 Tax=Paramecium tetraurelia RepID=A0D8D3_PARTE
GJ14616 {ECO:0000313|EMBL:EDW71539.1}; Flags: Fragment;; TaxID=7244 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.;" source="Drosophila virilis (Fruit fly).;"
methylase of chemotaxis methyl-accepting protein
AB_1215_Bin_123.fna_scaffold_21705_12
unknown

Not on your lists

10596..11051
DNA (456bp) protein (152aa)

This feature has no annotations

AB_1215_Bin_123.fna_scaffold_21705_13
Candidatus Nanosalina sp. J07AB43, Candidatus Nanosalina, Nanohaloarchaea, Nanohaloarchaeota, Archaea

Not on your lists

11582..13285
DNA (1704bp) protein (568aa)
PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 87-like n=1 Tax=Rattus norvegicus RepID=UPI0002687844
Uncharacterized protein {ECO:0000313|EMBL:EGQ43931.1}; TaxID=889948 species="Archaea; Nanohaloarchaeota; Nanohaloarchaea; Candidatus Nanosalina.;" source="Nanosalina sp. (strain J07AB43).;"
AB_1215_Bin_123.fna_scaffold_21705_14
unknown

Not on your lists

13375..14076
DNA (702bp) protein (234aa)

This feature has no annotations

AB_1215_Bin_123.fna_scaffold_21705_15

Not on your lists

comp(14159..14509)
DNA (351bp) protein (117aa)
DNA and RNA helicase {ECO:0000313|EMBL:KHO51419.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
PHP domain protein id=5800577 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
PHP protein
AB_1215_Bin_123.fna_scaffold_21705_16
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(14549..15394)
DNA (846bp) protein (282aa)
PHP domain protein n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E0A1_DICTD id=5103143 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
PHP protein
Tax=CG_Woesearch_02
AB_1215_Bin_123.fna_scaffold_21705_17
unknown

Not on your lists

15986..16918
DNA (933bp) protein (311aa)

This feature has no annotations

AB_1215_Bin_123.fna_scaffold_21705_18
unknown

Not on your lists

comp(16952..17995)
DNA (1044bp) protein (348aa)

This feature has no annotations

AB_1215_Bin_123.fna_scaffold_21705_19
unknown

Not on your lists

comp(18014..20182)
DNA (2169bp) protein (723aa)

This feature has no annotations

AB_1215_Bin_123.fna_scaffold_21705_20
unknown

Not on your lists

comp(20192..21115)
DNA (924bp) protein (308aa)

This feature has no annotations

AB_1215_Bin_123.fna_scaffold_21705_21
unknown

Not on your lists

comp(21374..21475)
DNA (102bp) protein (34aa)

This feature has no annotations

Displaying 21 items

View Taxonomy