ggKbase home page

ERMGT100_2_curated_scaffold_4

Search features with annotation key words

Displaying items 121-150 of 170 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMGT100_2_curated_scaffold_4_117
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

143381..144145
-----------------
DNA (765bp)
protein (255aa)
alias=16ft_combo_ws3_scaffold_775_30 id=24424239 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_118
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

144171..144695
-----------------
DNA (525bp)
protein (175aa)
Uncharacterized protein n=1 Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZXQ3_DESOH
protein of unknown function DUF985
Uncharacterized protein {ECO:0000313|EMBL:AHG90536.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
ERMGT100_2_curated_scaffold_4_119
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(144705..146192)
-----------------
DNA (1488bp)
protein (496aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205] id=24424237 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
inosine-5''-monophosphate dehydrogenase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_120
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(146244..147014)
-----------------
DNA (771bp)
protein (257aa)
alias=16ft_combo_ws3_scaffold_775_33 id=24424236 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_121
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

147520..149085
-----------------
DNA (1566bp)
protein (522aa)
Protein translocase subunit SecD n=1 Tax=Cloacamonas acidaminovorans (strain Evry) RepID=B0VHR7_CLOAI id=5225605 bin=16ft_combo_ws3_JS1 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
secD; preprotein translocase subunit SecD
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_122
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

149100..150017
-----------------
DNA (918bp)
protein (306aa)
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF id=24424234 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
secF; preprotein translocase subunit SecF
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_123
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

150028..150987
-----------------
DNA (960bp)
protein (320aa)
id=5225607 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_124
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

151108..151788
-----------------
DNA (681bp)
protein (227aa)
hypothetical protein id=24424232 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_125
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

151820..155134
-----------------
DNA (3315bp)
protein (1105aa)
Chromosome segregation ATPase-like protein n=2 Tax=Rhodothermus marinus RepID=D0MKF4_RHOM4 id=5225609 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_126
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

155131..156795
-----------------
DNA (1665bp)
protein (555aa)
Tetratricopeptide repeat domain protein n=1 Tax=Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146) RepID=A4CH20_ROBBH id=5225610 bin=16ft_combo_ws3_JS1 species=Robiginitalea biformata genus=Robiginitalea taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_127
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

156798..158273
-----------------
DNA (1476bp)
protein (492aa)
Uncharacterized protein n=1 Tax=Melioribacter roseus (strain P3M) RepID=I7A3J4_MELRP id=5225611 bin=16ft_combo_ws3_JS1 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_128
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(158299..160554)
-----------------
DNA (2256bp)
protein (752aa)
Serine/threonine protein kinase id=1250165 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
protein kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
ERMGT100_2_curated_scaffold_4_129
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(160610..162052)
-----------------
DNA (1443bp)
protein (481aa)
OmpA/MotB domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4B5_PALPW id=5225613 bin=16ft_combo_ws3_JS1 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
OmpA/MotB domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_130
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

162232..162711
-----------------
DNA (480bp)
protein (160aa)
hypothetical protein id=24462126 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Brevibacillus borstelensis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
ERMGT100_2_curated_scaffold_4_131
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

162773..163555
-----------------
DNA (783bp)
protein (261aa)
Dihydropteroate synthase n=1 Tax=Halorhodospira halophila (strain DSM 244 / SL1) RepID=A1WXX1_HALHL id=5225615 bin=16ft_combo_ws3_JS1 species=Halorhodospira halophila genus=Halorhodospira taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
dihydropteroate synthase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_132
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(163563..165362)
-----------------
DNA (1800bp)
protein (600aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GKH0_9DELT
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:EDM73634.1}; TaxID=391625 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
signal transduction histidine kinase, nitrogen specific, NtrB
ERMGT100_2_curated_scaffold_4_133
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

165426..166259
-----------------
DNA (834bp)
protein (278aa)
hypothetical protein id=24462128 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_trna_4
unknown

Not on your lists

166344..166416
-----------------
DNA (73bp)
transferRNA Met
ERMGT100_2_curated_scaffold_4_134
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

166468..167589
-----------------
DNA (1122bp)
protein (374aa)
tRNA(Ile)-lysidine synthase n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I1P2_DESAP id=5225617 bin=16ft_combo_ws3_JS1 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
tRNA(Ile)-lysidine synthetase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_135
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

167586..168140
-----------------
DNA (555bp)
protein (185aa)
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8); K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] id=24462130 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypoxanthine-guanine phosphoribosyltransferase (EC:2.4.2.8)
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_136
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

168133..170190
-----------------
DNA (2058bp)
protein (686aa)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6ZNT1_MELRP id=5225619 bin=16ft_combo_ws3_JS1 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ftsH; cell division protease FtsH
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_137
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(170447..172642)
-----------------
DNA (2196bp)
protein (732aa)
Fatty oxidation complex, alpha subunit n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BL13_9GAMM id=5225620 bin=16ft_combo_ws3_JS1 species=Nitrococcus mobilis genus=Nitrococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
fadJ; multifunctional fatty acid oxidation complex subunit alpha
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_138
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(172659..173939)
-----------------
DNA (1281bp)
protein (427aa)
Acetyl-CoA acetyltransferase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XR42_9BACT id=5225621 bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
acetyl-CoA acetyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_139
Haloterrigena salina, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(173975..174802)
-----------------
DNA (828bp)
protein (276aa)
Methyltransferase type 11 n=1 Tax=Haloterrigena salina JCM 13891 RepID=M0C1U9_9EURY
methyltransferase type 11
Methyltransferase type 11 {ECO:0000313|EMBL:ELZ17180.1}; TaxID=1227488 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena salina JCM 13891.;"
ERMGT100_2_curated_scaffold_4_140
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(174840..176504)
-----------------
DNA (1665bp)
protein (555aa)
Uncharacterized protein n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A7Y2_NATTJ id=5225626 bin=16ft_combo_ws3_JS1 species=Natranaerobius thermophilus genus=Natranaerobius taxon_order=Natranaerobiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_141
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(176581..177039)
-----------------
DNA (459bp)
protein (153aa)
Cold-shock DNA-binding domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X0P4_9SPHN
DNA, contig: SP622 {ECO:0000313|EMBL:GAN13578.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
cspC; Cold shock protein CspC
ERMGT100_2_curated_scaffold_4_142
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(177610..178425)
-----------------
DNA (816bp)
protein (272aa)
hypothetical protein; K07502 hypothetical protein id=24523019 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_143
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(178422..180794)
-----------------
DNA (2373bp)
protein (791aa)
DEAD/DEAH box family ATP-dependent helicase n=1 Tax=Desmospora sp. 8437 RepID=F5SAX2_9BACL id=5225630 bin=16ft_combo_ws3_JS1 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
helicase family protein with metal-binding cysteine cluster
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_144
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

180966..183752
-----------------
DNA (2787bp)
protein (929aa)
Putative uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FEG4_SORC5 id=5223758 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_4_145
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(183760..184821)
-----------------
DNA (1062bp)
protein (354aa)
id=5225631 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying items 121-150 of 170 in total

View Taxonomy