ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_966

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_966_1
Sutterella parvirubra, Sutterella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(167..910)
DNA (744bp) protein (248aa)
frdB; fumarate reductase iron-sulfur subunit (EC:1.3.5.1)
Fumarate reductase iron-sulfur subunit Tax=Sutterella parvirubra YIT 11816 RepID=H3KI94_9BURK
Fumarate reductase iron-sulfur subunit {ECO:0000313|EMBL:EHY30141.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sutterellaceae; Sutterella.;" source="Sutterella parvirubra YIT 11816.;"
PLM4_65_b1_redo_sep16_scaffold_966_2
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(977..2635)
DNA (1659bp) protein (553aa)
frdA_[H]; Succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1)
Fumarate reductase flavoprotein subunit Tax=Proteobacteria bacterium CAG:139 RepID=R6A8L1_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
PLM4_65_b1_redo_sep16_scaffold_966_3
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2660..2896)
DNA (237bp) protein (79aa)
Fumarate reductase flavoprotein subunit Tax=Burkholderiales RepID=D9Y4M2_9BURK
fumarate reductase flavoprotein subunit
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
PLM4_65_b1_redo_sep16_scaffold_966_4
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2916..3527)
DNA (612bp) protein (204aa)
fumarate reductase Tax=Teredinibacter turnerae RepID=UPI0003807B0A
fumarate reductase cytochrome b-556 subunit
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
PLM4_65_b1_redo_sep16_scaffold_966_5
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3959..4471)
DNA (513bp) protein (171aa)
putative peroxiredoxin OsmC (EC:1.11.1.15)
Putative Peroxiredoxin OsmC Tax=Candidatus Nitrospira defluvii RepID=D8PJJ3_9BACT
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM4_65_b1_redo_sep16_scaffold_966_6
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4523..5485)
DNA (963bp) protein (321aa)
CBS domain protein Tax=Selenomonas RepID=C9LXK8_SELS3
CBS domain containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_966_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(5839..8562)
DNA (2724bp) protein (908aa)
pacL; Cation-transporting ATPase pacL (EC:3.6.3.-)
Cation-transporting ATPase pacL {ECO:0000313|EMBL:CBE69333.1}; EC=3.6.3.- {ECO:0000313|EMBL:CBE69333.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Cation-transporting ATPase pacL Tax=Candidatus Methylomirabilis oxyfera RepID=D5MI40_9BACT
PLM4_65_b1_redo_sep16_scaffold_966_8
unknown

Not on your lists

comp(8678..8767)
DNA (90bp) protein (30aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_966_9
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8958..10646)
DNA (1689bp) protein (563aa)
Phosphorylase bin=GWD2_Deltaproteobacteria_55_8 species=Methylomicrobium alcaliphilum genus=Methylomicrobium taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_966_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10980..12350
DNA (1371bp) protein (457aa)
Cobalamin synthesis protein P47K Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RZU5_THEOJ
cobalamin synthesis protein P47K
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_966_11
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12357..14915
DNA (2559bp) protein (853aa)
Cation transport ATPase bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
cation transport ATPase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM4_65_b1_redo_sep16_scaffold_966_12
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14924..15364)
DNA (441bp) protein (147aa)
UspA domain-containing protein bin=GWD2_Deltaproteobacteria_55_8 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
UspA domain-containing protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM4_65_b1_redo_sep16_scaffold_966_13
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15638..15841
DNA (204bp) protein (68aa)
Uncharacterized protein Tax=Blastopirellula marina DSM 3645 RepID=A3ZMY8_9PLAN
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_966_14
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15855..16478)
DNA (624bp) protein (208aa)
Putative uncharacterized protein Tax=Geobacter sp. (strain M18) RepID=E8WKK2_GEOS8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW13580.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
PLM4_65_b1_redo_sep16_scaffold_966_15
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16663..17271)
DNA (609bp) protein (203aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_966_16
unknown

Not on your lists

comp(17449..17727)
DNA (279bp) protein (93aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_966_17
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17752..18675)
DNA (924bp) protein (308aa)
UspA domain protein bin=GWD2_Deltaproteobacteria_55_8 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
UspA domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_966_18
unknown

Not on your lists

comp(18689..18826)
DNA (138bp) protein (46aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_966_19
unknown

Not on your lists

comp(18845..18955)
DNA (111bp) protein (37aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_966_20
Chlorobium phaeovibrioides, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(18952..19212)
DNA (261bp) protein (87aa)
ferritin Tax=Hippea alviniae RepID=UPI0003B790F7
Ferritin, Dps family protein
Ferritin, Dps family protein {ECO:0000313|EMBL:ABP37206.1}; species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Prosthecochloris vibrioformis (strain DSM 265) (Chlorobium vibrioforme; subsp. thiosulfatophilum (strain DSM 265)) (Chlorobium phaeovibrioides; (strain DSM 265)).;"
PLM4_65_b1_redo_sep16_scaffold_966_21
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19935..21464
DNA (1530bp) protein (510aa)
RNA polymerase sigma factor RpoD Tax=Geobacter sulfurreducens RepID=D7AEN1_GEOSK
rpoD; RNA polymerase sigma-70 factor RpoD
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_966_22
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21688..23034)
DNA (1347bp) protein (449aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Caldithrix abyssi DSM 13497 RepID=H1XW99_9BACT
NtrC family response regulator
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_966_23
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23236..25554)
DNA (2319bp) protein (773aa)
Putative signal transduction histidine kinase Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SFX5_RHOMR
putative signal transduction histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_966_24
unknown

Not on your lists

25797..25907
DNA (111bp) protein (37aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_966_25
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

Not on your lists

comp(25933..27090)
DNA (1158bp) protein (386aa)
Putative ATPase involved in replication control, Cdc46/Mcm family Tax=Brevibacillus sp. CF112 RepID=J2HCQ4_9BACL
DNA primase small subunit
Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
PLM4_65_b1_redo_sep16_scaffold_966_26
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

27393..28484
DNA (1092bp) protein (364aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PJ54_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK43291.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM4_65_b1_redo_sep16_scaffold_966_27
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28697..29140
DNA (444bp) protein (148aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_966_28
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29493..30116
DNA (624bp) protein (208aa)
Cold-shock protein DNA-binding protein bin=GWD2_Deltaproteobacteria_55_8 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
sigma 54 modulation protein/ribosomal protein S30EA
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_966_29
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30138..30968
DNA (831bp) protein (277aa)
Universal stress protein bin=GWD2_Deltaproteobacteria_55_8 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
UspA domain-containing protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM4_65_b1_redo_sep16_scaffold_966_30
unknown

Not on your lists

31286..31492
DNA (207bp) protein (69aa)

This feature has no annotations

Displaying 30 items

View Taxonomy