ggKbase home page

PLM4_5_b1_sep16_scaffold_3205

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_3205_1
RLO_PLX_64_10, Bacteria

Not on your lists

121..597
DNA (477bp) protein (159aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12); K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ispF; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase (EC:4.6.1.12)
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_5_b1_sep16_scaffold_3205_2
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

669..1085
DNA (417bp) protein (139aa)
2'-5' RNA ligase Tax=Thauera phenylacetica B4P RepID=N6ZMH9_9RHOO
2'-5' RNA ligase
Tax=GWA2_Rhodocyclales_65_20_curated
PLM4_5_b1_sep16_scaffold_3205_3
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1094..1501)
DNA (408bp) protein (136aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6AJB4_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN36411.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM4_5_b1_sep16_scaffold_3205_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1597..2073
DNA (477bp) protein (159aa)
Cyclic nucleotide-binding domain (CNMP-BD) protein Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q121L3_POLSJ
cyclic nucleotide-binding domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM4_5_b1_sep16_scaffold_3205_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2070..3401)
DNA (1332bp) protein (444aa)
histidine kinase (EC:2.7.3.-)
Histidine kinase Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H3L4_METFK
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_3205_6
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3398..4123)
DNA (726bp) protein (242aa)
Response regulator Tax=Azoarcus sp. (strain BH72) RepID=A1K671_AZOSB
ompR; osmolarity response regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_3205_7
unknown

Not on your lists

4372..4524
DNA (153bp) protein (51aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_3205_8
unknown

Not on your lists

4536..4874
DNA (339bp) protein (113aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_3205_9
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4932..5378
DNA (447bp) protein (149aa)
Uncharacterized protein Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHT1_AZOSU
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM4_5_b1_sep16_scaffold_3205_10
unknown

Not on your lists

5383..5511
DNA (129bp) protein (43aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_3205_11
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5519..7000
DNA (1482bp) protein (494aa)
Putative signal peptide protein Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W038_9BURK
signal peptide protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM4_5_b1_sep16_scaffold_3205_12
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7019..8176
DNA (1158bp) protein (386aa)
PF07394 family protein Tax=Burkholderia multivorans CF2 RepID=J4RT74_9BURK
Tat (twin-arginine translocation) pathway signal sequence domain protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_3205_13
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8182..9303
DNA (1122bp) protein (374aa)
Uncharacterized protein Tax=Pseudomonas aeruginosa RepID=Q9HZD2_PSEAE
chlorophyllase family protein
Uncharacterized protein {ECO:0000313|EMBL:AAG06464.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG; 12228).;"
PLM4_5_b1_sep16_scaffold_3205_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9521..10651
DNA (1131bp) protein (377aa)
DGQHR region Tax=mine drainage metagenome RepID=T1D6X4_9ZZZZ
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_3205_15
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10663..11190)
DNA (528bp) protein (176aa)
pyridoxamine 5''''-phosphate oxidase Tax=Sphingomonas echinoides RepID=UPI00026CDB25
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
PLM4_5_b1_sep16_scaffold_3205_16
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11233..11949)
DNA (717bp) protein (239aa)
2-haloalkanoic acid dehalogenase, type II Tax=Mycobacterium rhodesiae (strain NBB3) RepID=G8RJ41_MYCRN
2-haloalkanoic acid dehalogenase, type II
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_3205_17
Volvox carteri, Volvox, Chlamydomonadales, Chlorophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(11946..12299)
DNA (354bp) protein (118aa)
Putative uncharacterized protein Tax=Volvox carteri RepID=D8THJ5_VOLCA
Putative uncharacterized protein {ECO:0000313|EMBL:EFJ52723.1}; species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox.;" source="Volvox carteri (Green alga).;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_3205_18
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12323..12445)
DNA (123bp) protein (41aa)
Endoribonuclease L-PSP Tax=Lautropia mirabilis ATCC 51599 RepID=E7RW16_9BURK
putative Endoribonuclease L-PSP
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_3205_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12806..13783
DNA (978bp) protein (326aa)
hypothetical protein Tax=Acidovorax sp. MR-S7 RepID=UPI000380CCA8
Uncharacterized protein {ECO:0000313|EMBL:GAD24868.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_3205_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13936..14268
DNA (333bp) protein (111aa)
L-carnitine dehydratase/bile acid-inducible protein F bin=GWF1_Burkholderiales_GWF1_66_17 species=Burkholderia gladioli genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
acyl-CoA transferase/carnitine dehydratase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Displaying 20 items

View Taxonomy