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PLM4_5_b1_sep16_scaffold_991

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_991_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(104..1099)
DNA (996bp) protein (332aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha Tax=Nitrosospira sp. APG3 RepID=M5DLV5_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_991_2
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1210..1836)
DNA (627bp) protein (209aa)
30S ribosomal protein S4 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RS4_NITMU
rpsD; 30S ribosomal protein S4
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_991_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1849..2238)
DNA (390bp) protein (130aa)
30S ribosomal protein S11 Tax=Methylophilaceae RepID=RS11_METFK
30S ribosomal protein S11
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM4_5_b1_sep16_scaffold_991_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2268..2645)
DNA (378bp) protein (126aa)
30S ribosomal protein S13 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CP88_SIDLE
30S ribosomal protein S13
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_991_5
R_Betaproteobacteria_61_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2779..2892)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 Tax=Burkholderiales RepID=RL36_LEPCP
rpmJ; 50S ribosomal protein L36
Tax=RifCSPlowO2_12_Betaproteobacteria_61_14_curated
PLM4_5_b1_sep16_scaffold_991_6

Not on your lists

comp(2922..3140)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 Tax=mine drainage metagenome RepID=T1C991_9ZZZZ
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000313|EMBL:EQD77638.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PLM4_5_b1_sep16_scaffold_991_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3140..4438)
DNA (1299bp) protein (433aa)
Protein translocase subunit SecY Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QNV8_AZOSU
preprotein translocase subunit SecY
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_991_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4468..5196)
DNA (729bp) protein (243aa)
50S ribosomal protein L15 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CP84_SIDLE
50S ribosomal protein L15
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM4_5_b1_sep16_scaffold_991_9
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5202..5408)
DNA (207bp) protein (69aa)
50S ribosomal protein L30 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI00036B11B2
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
50S ribosomal protein L30
PLM4_5_b1_sep16_scaffold_991_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5413..5937)
DNA (525bp) protein (175aa)
30S ribosomal protein S5 Tax=Nitrosospira sp. APG3 RepID=M5DME6_9PROT
rpsE; 30S ribosomal protein S5
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_991_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5950..6309)
DNA (360bp) protein (120aa)
50S ribosomal protein L18 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RL18_NITMU
50S ribosomal protein L18
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_991_12
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6319..6852)
DNA (534bp) protein (178aa)
50S ribosomal protein L6 Tax=Janthinobacterium sp. (strain Marseille) RepID=RL6_JANMA
rplF; 50S ribosomal protein L6
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_991_13
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6882..7277)
DNA (396bp) protein (132aa)
30S ribosomal protein S8 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI0003686FFA
rpsH; 30S ribosomal protein S8
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_991_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7298..7603)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 Tax=Nitrosospira sp. APG3 RepID=M5DLP9_9PROT
30S ribosomal protein S14
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_991_15
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7607..8194)
DNA (588bp) protein (196aa)
50S ribosomal protein L5 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RL5_NITMU
rplE; 50S ribosomal protein L5
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM4_5_b1_sep16_scaffold_991_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8191..8508)
DNA (318bp) protein (106aa)
50S ribosomal protein L24 Tax=Dechloromonas aromatica (strain RCB) RepID=RL24_DECAR
rplX; 50S ribosomal protein L24
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM4_5_b1_sep16_scaffold_991_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8529..8897)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 Tax=beta proteobacterium L13 RepID=UPI000364182F
50S ribosomal protein L14
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_991_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9104..9370)
DNA (267bp) protein (89aa)
30S ribosomal protein S17 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QNW9_AZOSU
30S ribosomal protein S17
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_991_19
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9367..9561)
DNA (195bp) protein (65aa)
50S ribosomal protein L29 Tax=Azoarcus sp. (strain BH72) RepID=RL29_AZOSB
rpmC; 50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
PLM4_5_b1_sep16_scaffold_991_20
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9565..9981)
DNA (417bp) protein (139aa)
50S ribosomal protein L16 Tax=Azoarcus toluclasticus RepID=UPI000380D0CB
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
PLM4_5_b1_sep16_scaffold_991_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9965..10729)
DNA (765bp) protein (255aa)
30S ribosomal protein S3 Tax=Nitrosospira sp. APG3 RepID=M5DLU0_9PROT
rpsC; 30S ribosomal protein S3
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM4_5_b1_sep16_scaffold_991_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10732..11070)
DNA (339bp) protein (113aa)
50S ribosomal protein L22 Tax=Nitrosospira sp. APG3 RepID=M5DKC5_9PROT
rplV; 50S ribosomal protein L22
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM4_5_b1_sep16_scaffold_991_23
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11082..11414)
DNA (333bp) protein (111aa)
30S ribosomal protein S19 Tax=Nitrosospira sp. APG3 RepID=M5DXF2_9PROT
rpsS; 30S ribosomal protein S19
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_991_24
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11441..12280)
DNA (840bp) protein (280aa)
50S ribosomal protein L2 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QNX5_AZOSU
50S ribosomal protein L2
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
PLM4_5_b1_sep16_scaffold_991_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12280..12630)
DNA (351bp) protein (117aa)
50S ribosomal protein L23 Tax=Nitrosospira sp. APG3 RepID=M5DMD7_9PROT
50S ribosomal protein L23
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM4_5_b1_sep16_scaffold_991_26
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12627..13247)
DNA (621bp) protein (207aa)
50S ribosomal protein L4 Tax=Herminiimonas arsenicoxydans RepID=RL4_HERAR
rplD; 50S ribosomal protein L4
50S ribosomal protein L4 {ECO:0000255|HAMAP-Rule:MF_01328}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
PLM4_5_b1_sep16_scaffold_991_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13247..13936)
DNA (690bp) protein (230aa)
50S ribosomal protein L3 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CP65_SIDLE
50S ribosomal protein L3
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_991_28
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14049..14366)
DNA (318bp) protein (106aa)
Ribosomal protein S10, bacterial Tax=mine drainage metagenome RepID=T0ZL53_9ZZZZ
rpsJ; 30S ribosomal protein S10
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM4_5_b1_sep16_scaffold_991_29
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14372..14509)
DNA (138bp) protein (46aa)
Elongation factor Tu Tax=Sulfuricella denitrificans skB26 RepID=K6V8W5_9PROT
tufA; elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Displaying 29 items

View Taxonomy