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SCNpilot_cont_300_bf_scaffold_643

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Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_643_1
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..7266
DNA (7266bp) protein (2422aa)
outer membrane adhesin-like protein n=1 Tax=Marinobacterium stanieri RepID=UPI0002559C05 rbh
Contig18, whole genome shotgun sequence {ECO:0000313|EMBL:KID12365.1}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacterace
hypothetical protein
SCNpilot_cont_300_bf_scaffold_643_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7398..8798
DNA (1401bp) protein (467aa)
Putative type I secretion outer membrane protein, TolC family n=1 Tax=Variovorax paradoxus B4 RepID=T1XGX9_VARPD rbh
putative type I secretion outer membrane protein, TolC family
Putative type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:AGU51776.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Vario
SCNpilot_cont_300_bf_scaffold_643_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8795..11053
DNA (2259bp) protein (753aa)
Type I secretion system ATPase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CL55_VARPS rbh
type I secretion system ATPase
Type I secretion system ATPase {ECO:0000313|EMBL:ACS21206.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax para
SCNpilot_cont_300_bf_scaffold_643_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11050..12282
DNA (1233bp) protein (411aa)
Type I secretion membrane fusion protein, HlyD family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CL54_VARPS rbh
HlyD family type I secretion membrane fusion protein
Type I secretion membrane fusion protein, HlyD family {ECO:0000313|EMBL:ACS21205.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
SCNpilot_cont_300_bf_scaffold_643_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12305..12751
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CL53_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS21204.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
SCNpilot_cont_300_bf_scaffold_643_6
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13097..14008
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GH79_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB03091.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_643_7
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14102..14410
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GQX3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB03092.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
hypothetical protein
SCNpilot_cont_300_bf_scaffold_643_8
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14426..14647)
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D43EE
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
hypothetical protein
SCNpilot_cont_300_bf_scaffold_643_9
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14644..14859)
DNA (216bp) protein (72aa)
conjugal transfer protein TraI n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036C9A12
Conjugal transfer protein TrbI {ECO:0000313|EMBL:EZP81834.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novos
conjugation TrbI family protein
SCNpilot_cont_300_bf_scaffold_643_10
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14991..16361
DNA (1371bp) protein (457aa)
Transposase of ISsp1 n=6 Tax=Sphingobium RepID=D4YYV3_SPHJU rbh
tnp; transposase of ISsp1
Transposase of ISsp1 {ECO:0000313|EMBL:BAI95535.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonic
SCNpilot_cont_300_bf_scaffold_643_11
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16417..17541)
DNA (1125bp) protein (375aa)
Conjugation TrbI-like protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCZ8_9SPHN
Conjugation TrbI-like protein {ECO:0000313|EMBL:EAT08742.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
conjugation TrbI family protein
SCNpilot_cont_300_bf_scaffold_643_12
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17541..18551)
DNA (1011bp) protein (337aa)
Conjugal transfer protein TrbG/VirB9/CagX n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCZ9_9SPHN rbh
Conjugal transfer protein TrbG/VirB9/CagX {ECO:0000313|EMBL:EAT08741.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" sourc
P-type conjugative transfer protein TrbG
SCNpilot_cont_300_bf_scaffold_643_13
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18548..19231)
DNA (684bp) protein (228aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILW3_9SPHN
conjugal transfer protein TrbF
Conjugal transfer protein TrbF {ECO:0000313|EMBL:EQB03096.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingob
SCNpilot_cont_300_bf_scaffold_643_14
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19238..20578)
DNA (1341bp) protein (447aa)
P-type conjugative transfer protein TrbL n=2 Tax=Sphingomonas wittichii RepID=A5VCM7_SPHWW rbh
conjugal transfer protein TrbL
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:ABQ70043.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source
SCNpilot_cont_300_bf_scaffold_643_15
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20575..20982)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GSJ6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02933.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
hypothetical protein
SCNpilot_cont_300_bf_scaffold_643_16
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20996..21715)
DNA (720bp) protein (240aa)
Conjugal transfer protein TrbJ n=1 Tax=Sphingobium baderi LL03 RepID=T0HZJ4_9SPHN rbh
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:EQB02934.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingob
conjugal transfer protein TrbJ
SCNpilot_cont_300_bf_scaffold_643_17
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21712..24201)
DNA (2490bp) protein (830aa)
Conjugal transfer protein TrbE n=1 Tax=Sphingobium baderi LL03 RepID=T0HUG1_9SPHN rbh
Conjugal transfer protein TrbE {ECO:0000313|EMBL:EQB02935.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingob
conjugal transfer ATPase TrbE
SCNpilot_cont_300_bf_scaffold_643_18
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24198..24479)
DNA (282bp) protein (94aa)
Conjugal transfer protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GGS8_9SPHN
Conjugal transfer protein {ECO:0000313|EMBL:EQB02936.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium b
type IV secretory pathway, VirB3 family protein
SCNpilot_cont_300_bf_scaffold_643_19
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24476..24844)
DNA (369bp) protein (123aa)
Conjugal transfer protein TrbC n=1 Tax=Sphingobium baderi LL03 RepID=T0GQI8_9SPHN
Conjugal transfer protein TrbC {ECO:0000313|EMBL:EQB02937.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingob
conjugal transfer protein TrbC
SCNpilot_cont_300_bf_scaffold_643_20
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24841..25779)
DNA (939bp) protein (313aa)
Conjugal transfer protein TrbB n=1 Tax=Sphingobium baderi LL03 RepID=T0GSK2_9SPHN rbh
Conjugal transfer protein TrbB {ECO:0000313|EMBL:EQB02938.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingob
P-type conjugative transfer ATPase TrbB
SCNpilot_cont_300_bf_scaffold_643_21
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26057..26485)
DNA (429bp) protein (143aa)
CopG family transcripitonal regulator n=1 Tax=Sphingobium baderi LL03 RepID=T0GGT3_9SPHN
CopG family transcripitonal regulator {ECO:0000313|EMBL:EQB02941.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="S
helix-turn-helix domain-containing protein
SCNpilot_cont_300_bf_scaffold_643_22
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26495..28477)
DNA (1983bp) protein (661aa)
Conjugal transfer protein TraG n=1 Tax=Sphingobium baderi LL03 RepID=T0GQJ1_9SPHN rbh
Conjugal transfer protein TraG {ECO:0000313|EMBL:EQB02942.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingob
conjugal transfer coupling protein TraG
SCNpilot_cont_300_bf_scaffold_643_23
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28493..30256)
DNA (1764bp) protein (588aa)
Type VI secretion protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GSK6_9SPHN rbh
Type VI secretion protein {ECO:0000313|EMBL:EQB02943.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium b
hypothetical protein
SCNpilot_cont_300_bf_scaffold_643_24
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30510..31076)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HZK1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB02944.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
hypothetical protein
SCNpilot_cont_300_bf_scaffold_643_25
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31073..31768)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HUG8_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB02945.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
lytic transglycosylase subunit
SCNpilot_cont_300_bf_scaffold_643_26
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31773..32117)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GGT8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02946.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
hypothetical protein
SCNpilot_cont_300_bf_scaffold_643_27
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32153..32500)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489872
Uncharacterized protein {ECO:0000313|EMBL:EQB02947.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
hypothetical protein
SCNpilot_cont_300_bf_scaffold_643_28
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32481..33059)
DNA (579bp) protein (193aa)
conjugal transfer protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00035CD3CD
Conjugal transfer protein {ECO:0000313|EMBL:EAT08724.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas
Type IV secretory pathway protease TraF-like protein
SCNpilot_cont_300_bf_scaffold_643_29
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33056..33643)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HZK4_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB02949.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
hypothetical protein
SCNpilot_cont_300_bf_scaffold_643_30
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33640..34986)
DNA (1347bp) protein (449aa)
Cytosine-specific methyltransferase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B6W9_PARDP rbh
Uncharacterized protein {ECO:0000313|EMBL:EZQ17751.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzan
C-5 cytosine-specific DNA methylase
Displaying items 1-30 of 44 in total

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