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SCNpilot_expt_500_bf_scaffold_339

Search features with annotation key words

Displaying items 1-30 of 63 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_339_1
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72..743
DNA (672bp) protein (224aa)
Resolvase, N terminal domain protein n=1 Tax=Xanthomonas citri pv. mangiferaeindicae LMG 941 RepID=H8FM55_XANCI
Resolvase, N terminal domain protein {ECO:0000313|EMBL:CCG39442.1}; TaxID=1156940 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. mangiferaeindicae LMG 941.;"
putative resolvase (resP)
SCNpilot_expt_500_bf_scaffold_339_2

Not on your lists

736..1113
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=Q91UT7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CAC79150.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_500_bf_scaffold_339_3
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1277..1528
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VVL4_POLNA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM39692.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_expt_500_bf_scaffold_339_4
unknown

Not on your lists

1532..1984
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_339_5
Ralstonia sp. 5_2_56FAA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2064..3095
DNA (1032bp) protein (344aa)
Replication initiator protein A n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GGY9_ALIDK
Replication initiator protein A
Uncharacterized protein {ECO:0000313|EMBL:EGY61119.1}; TaxID=658080 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. 5_2_56FAA.;"
SCNpilot_expt_500_bf_scaffold_339_6
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4120..5259)
DNA (1140bp) protein (380aa)
ParB-like partition protein n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6XER3_METSD
parB-like partition protein
ParB-like partition protein {ECO:0000313|EMBL:ACT52120.1}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
SCNpilot_expt_500_bf_scaffold_339_7
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5309..6061)
DNA (753bp) protein (251aa)
Cobyrinic acid ac-diamide synthase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1C2_HALNC
Uncharacterized protein {ECO:0000313|EMBL:KHD17772.1}; TaxID=159450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sacchari.;"
cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein
SCNpilot_expt_500_bf_scaffold_339_8
unknown

Not on your lists

comp(6009..6398)
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_339_9
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6443..7777)
DNA (1335bp) protein (445aa)
Conjugation TrbI family protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1C0_HALNC
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
Conjugation TrbI family protein {ECO:0000313|EMBL:ACX96493.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
SCNpilot_expt_500_bf_scaffold_339_10
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7783..8874)
DNA (1092bp) protein (364aa)
P-type conjugative transfer protein TrbG n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1B9_HALNC
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:ACX96492.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
SCNpilot_expt_500_bf_scaffold_339_11
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8892..9605)
DNA (714bp) protein (238aa)
Conjugal transfer protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1B8_HALNC
Conjugal transfer protein; K03200 type IV secretion system protein VirB5
Conjugal transfer protein {ECO:0000313|EMBL:ACX96491.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
SCNpilot_expt_500_bf_scaffold_339_12
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10708..11433)
DNA (726bp) protein (242aa)
TrbL/VirB6 plasmid conjugal transfer protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TJ64_ACIAC
TrbL/VirB6 plasmid conjugal transfer protein; K07344 type IV secretion system protein TrbL
TrbL/VirB6 plasmid conjugal transfer protein {ECO:0000313|EMBL:ABM31002.1}; Flags: Precursor;; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_expt_500_bf_scaffold_339_13
unknown

Not on your lists

comp(11430..11768)
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_339_14
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11768..12520)
DNA (753bp) protein (251aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L171_HALNC
Uncharacterized protein {ECO:0000313|EMBL:KGG84775.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
P-type conjugative transfer protein TrbJ
SCNpilot_expt_500_bf_scaffold_339_15
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12560..15019)
DNA (2460bp) protein (820aa)
CagE, TrbE, VirB component of type IV transporter system, conserved region n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L172_HALNC rbh
type IV transporter system CagE/TrbE/VirB; K03199 type IV secretion system protein VirB4 rbh
CagE, TrbE, VirB component of type IV transporter system, conserved region {ECO:0000313|EMBL:ACX96445.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
SCNpilot_expt_500_bf_scaffold_339_16
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15021..15332)
DNA (312bp) protein (104aa)
conjugal transfer protein TrbD n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI0003765F3F
Conjugal transfer protein TrbD 1 {ECO:0000313|EMBL:AIC29729.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
trbD; conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
SCNpilot_expt_500_bf_scaffold_339_17
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15336..15674)
DNA (339bp) protein (113aa)
Conjugal transfer protein TrbC n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L174_HALNC
Conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
Conjugal transfer protein TrbC {ECO:0000313|EMBL:ACX96447.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
SCNpilot_expt_500_bf_scaffold_339_18
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15661..16710)
DNA (1050bp) protein (350aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L177_HALNC rbh
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11 rbh
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:ACX96450.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
SCNpilot_expt_500_bf_scaffold_339_19
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16789..17676
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZJ60_TERRK
Uncharacterized protein {ECO:0000313|EMBL:KGG84784.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_339_20
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18236..18664
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TJ66_ACIAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM31004.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_expt_500_bf_scaffold_339_21
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18703..20604
DNA (1902bp) protein (634aa)
Uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GUQ0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KGG84790.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
type IV secretory pathway VirD2 pilin (relaxase)-like protein
SCNpilot_expt_500_bf_scaffold_339_22
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20627..21217
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q121G6_POLSJ
Uncharacterized protein {ECO:0000313|EMBL:KGG84791.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_339_23

Not on your lists

21383..22978
DNA (1596bp) protein (532aa)
TraO protein n=1 Tax=uncultured bacterium RepID=Q91US1_9BACT
TraO protein {ECO:0000313|EMBL:CAC79166.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_339_24
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23029..25629
DNA (2601bp) protein (867aa)
TRAG family protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1A2_HALNC rbh
TRAG family protein; K03205 type IV secretion system protein VirD4 rbh
TRAG family protein {ECO:0000313|EMBL:ACX96475.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
SCNpilot_expt_500_bf_scaffold_339_25
Marichromatium purpuratum, Marichromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25642..26085
DNA (444bp) protein (148aa)
Single-stranded DNA-binding protein n=1 Tax=Marichromatium purpuratum 984 RepID=F9U4N5_MARPU
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=765910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Marichromatium.;" source="Marichromatium purpuratum 984.;"
single-strand binding protein; K03111 single-strand DNA-binding protein
SCNpilot_expt_500_bf_scaffold_339_26
Alcanivorax hongdengensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26152..26688
DNA (537bp) protein (179aa)
Conjugal transfer peptidase TraF n=1 Tax=Alcanivorax hongdengensis A-11-3 RepID=L0W8V1_9GAMM
Conjugal transfer peptidase TraF {ECO:0000313|EMBL:EKF73379.1}; TaxID=1177179 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax hongdengensis A-11-3.;"
TraF protein of DNA transfer system
SCNpilot_expt_500_bf_scaffold_339_27
unknown

Not on your lists

26700..27014
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_339_28

Not on your lists

27011..29257
DNA (2247bp) protein (749aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
DNA topoisomerase III (EC:5.99.1.2); K03169 DNA topoisomerase III [EC:5.99.1.2]
DNA topoisomerase n=1 Tax=uncultured bacterium RepID=J9Z6S1_9BACT
SCNpilot_expt_500_bf_scaffold_339_29
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29258..30475
DNA (1218bp) protein (406aa)
TraB family protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L165_HALNC rbh
TraB family protein rbh
Conjugal transfer protein TraB {ECO:0000313|EMBL:KDR90377.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
SCNpilot_expt_500_bf_scaffold_339_30
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30492..31211
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZMA2_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:KGG84405.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
lytic transglycosylase; K03194 type IV secretion system protein VirB1
Displaying items 1-30 of 63 in total

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