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S15_scaffold_116_curated

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Displaying items 1-30 of 129 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S15_scaffold_116_curated_1
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(718..2121)
DNA (1404bp) protein (468aa)
amino acid permease n=1 Tax=Pseudomonas fluorescens RepID=UPI000379ABC5 rbh
AAT family amino acid transporter {ECO:0000313|EMBL:BAQ74399.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
AAT family amino acid transporter rbh
S15_scaffold_116_curated_2
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2330..4585)
DNA (2256bp) protein (752aa)
rpfC1; sensory/regulatory protein RpfC (EC:2.7.13.3) rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
Sensory/regulatory protein RpfC n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R8A5_9PSED rbh
S15_scaffold_116_curated_3
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4582..5364)
DNA (783bp) protein (261aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Pseudomonas fluorescens RepID=UPI00031707EB rbh
Periplasmic amino acid-binding protein-like protein {ECO:0000313|EMBL:BAQ80708.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
periplasmic amino acid-binding protein-like protein
S15_scaffold_116_curated_4
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5381..6097)
DNA (717bp) protein (239aa)
Chemotaxis protein CheY n=1 Tax=Pseudomonas sp. CMAA1215 RepID=U6ZSV9_9PSED rbh
DNA-binding response regulator {ECO:0000313|EMBL:BAQ80707.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
arcA1; aerobic respiration control protein ArcA rbh
S15_scaffold_116_curated_5
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6180..6818)
DNA (639bp) protein (213aa)
Transcriptional regulator, TetR family n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KD70_PSEF5 rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:BAQ80706.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
TetR family transcriptional regulator
S15_scaffold_116_curated_6
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7286..8080)
DNA (795bp) protein (265aa)
Putative aldolase class 2 protein CC n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RFR1_9PSED rbh
putative aldolase class 2 protein CC rbh
Class II aldolase and adducin N-terminal domain protein {ECO:0000313|EMBL:AAY91978.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_116_curated_7
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8180..9253)
DNA (1074bp) protein (358aa)
Extracellular solute-binding protein, PotD/PotF family n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R8A3_9PSED rbh
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:BAQ80704.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
S15_scaffold_116_curated_8
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9468..11420
DNA (1953bp) protein (651aa)
NADH oxidase (EC:1.-.-.-) rbh
oxidoreductase n=1 Tax=Pseudomonas fluorescens RepID=UPI0002E565B1 rbh
Oxidoreductase, FAD/FMN-binding/pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:AAY91976.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_116_curated_9
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11494..12126
DNA (633bp) protein (211aa)
DNA-binding protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RJK0_9PSED rbh
DNA-binding protein {ECO:0000313|EMBL:BAQ80702.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
DNA-binding protein
S15_scaffold_116_curated_10
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12177..12314)
DNA (138bp) protein (46aa)
Uncharacterized protein {ECO:0000313|EMBL:BAQ80701.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
S15_scaffold_116_curated_11
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12280..13110)
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Pseudomonas fluorescens RepID=UPI0003741DBB rbh
Uncharacterized protein {ECO:0000313|EMBL:BAQ80700.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
hypothetical protein
S15_scaffold_116_curated_12
Halomonas sp. HAL1, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14829..15383)
DNA (555bp) protein (185aa)
Exonuclease, RNase T and DNA polymerase III n=1 Tax=Halomonas sp. HAL1 RepID=G4F2X8_9GAMM rbh
Exonuclease, RNase T and DNA polymerase III {ECO:0000313|EMBL:EHA16831.1}; TaxID=550984 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. HAL1.;"
Exonuclease RNase T and DNA polymerase III
S15_scaffold_116_curated_13
Halomonas sp. HAL1, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15412..16308)
DNA (897bp) protein (299aa)
AAA family ATPase n=1 Tax=Salmonella enterica subsp. enterica serovar Kentucky str. ATCC 9263 RepID=V1ZL60_SALET rbh
ATPase central domain-containing protein {ECO:0000313|EMBL:EHA16832.1}; TaxID=550984 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. HAL1.;"
AAA ATPase central domain protein
S15_scaffold_116_curated_14
Halomonas sp. HAL1, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16305..16784)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Salmonella enterica subsp. enterica serovar Kentucky str. ATCC 9263 RepID=V1YS98_SALET
Uncharacterized protein {ECO:0000313|EMBL:EHA16833.1}; TaxID=550984 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. HAL1.;"
hypothetical protein
S15_scaffold_116_curated_15
Vibrio parahaemolyticus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16790..17737)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Salmonella enterica subsp. enterica serovar Kentucky str. ATCC 9263 RepID=V1YNX6_SALET rbh
Whole genome shotgun sequence {ECO:0000313|EMBL:KIT25094.1}; TaxID=1288782 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio parahaemolyticus VP766.;"
hypothetical protein
S15_scaffold_116_curated_16
Halomonas sp. HAL1, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17788..19344)
DNA (1557bp) protein (519aa)
Uncharacterized protein n=1 Tax=Salmonella enterica subsp. enterica serovar Kentucky str. ATCC 9263 RepID=V1YK26_SALET rbh
Purine phosphorylase family 1 {ECO:0000313|EMBL:EHA16835.1}; TaxID=550984 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. HAL1.;"
hypothetical protein
S15_scaffold_116_curated_17
unknown

Not on your lists

comp(19573..20334)
DNA (762bp) protein (254aa)

This feature has no annotations

S15_scaffold_116_curated_18
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20506..20787)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R899_9PSED
Uncharacterized protein {ECO:0000313|EMBL:BAQ74387.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
hypothetical protein
S15_scaffold_116_curated_19
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21039..21746
DNA (708bp) protein (236aa)
Phytanoyl-CoA dioxygenase, PhyH family n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R5T3_9PSED rbh
phytanoyl-CoA dioxygenase, PhyH family
Phytanoyl-CoA dioxygenase, PhyH family {ECO:0000313|EMBL:BAQ80692.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
S15_scaffold_116_curated_20
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21793..21981)
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Pseudomonas fluorescens RepID=UPI000308AB1F
hypothetical protein
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:BAQ80691.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
S15_scaffold_116_curated_21
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21984..22247)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KD76_PSEF5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAY91973.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_116_curated_22
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22475..22903
DNA (429bp) protein (143aa)
Uncharacterized protein n=2 Tax=Pseudomonas protegens RepID=Q4KD80_PSEF5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAY91969.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_116_curated_23
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23022..25202)
DNA (2181bp) protein (727aa)
Catalase-peroxidase {ECO:0000255|HAMAP-Rule:MF_01961}; Short=CP {ECO:0000255|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000255|HAMAP-Rule:MF_01961};; Peroxidase/catalase {ECO:0000255|HAMAP-Rule:MF_01961}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
katG; catalase/peroxidase HPI (EC:1.11.1.6) rbh
Catalase-peroxidase n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=KATG_PSEF5 rbh
S15_scaffold_116_curated_24
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25458..26030)
DNA (573bp) protein (191aa)
Metal-dependent phosphohydrolase n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RJJ1_9PSED rbh
metal-dependent phosphohydrolase
Metal-dependent phosphohydrolase {ECO:0000313|EMBL:BAQ74373.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
S15_scaffold_116_curated_25
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26157..26765)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RFP8_9PSED rbh
hypothetical protein rbh
XRE family transcriptional regulator {ECO:0000313|EMBL:BAQ74372.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
S15_scaffold_116_curated_26
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26904..27245
DNA (342bp) protein (114aa)
protein-tyrosine phosphatase n=1 Tax=Pseudomonas fluorescens RepID=UPI00031AA899
Phosphatase {ECO:0000313|EMBL:BAQ80677.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
hypothetical protein
S15_scaffold_116_curated_27
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27385..28581)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R5S3_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:BAQ80675.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
hypothetical protein
S15_scaffold_116_curated_28
Pseudomonas sp. Os17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28815..29429
DNA (615bp) protein (205aa)
Alpha/beta hydrolase fold protein n=1 Tax=Pseudomonas sp. CFII68 RepID=S6I9T6_9PSED
Alpha/beta hydrolase family protein {ECO:0000313|EMBL:BAQ74369.1}; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;"
alpha beta hydrolase fold protein
S15_scaffold_116_curated_29
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29681..30268
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Pseudomonas fluorescens RepID=UPI00031543EA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAY91957.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;"
S15_scaffold_116_curated_30
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30509..31129
DNA (621bp) protein (207aa)
Putative amino acid efflux protein, LysE family n=1 Tax=Pseudomonas fluorescens (strain Pf0-1) RepID=Q3KEA3_PSEPF rbh
Lysine exporter protein LysE/YggA {ECO:0000313|EMBL:BAQ80672.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. St29.;"
lysine exporter protein LysE/YggA rbh
Displaying items 1-30 of 129 in total

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