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S18_scaffold_331_curated

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Displaying items 1-30 of 39 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S18_scaffold_331_curated_1
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..135
DNA (135bp) protein (45aa)
LysR family transcriptional regulator n=1 Tax=Pseudomonas mendocina RepID=UPI00036BA93D
LysR family transcriptional regulator {ECO:0000313|EMBL:KJU77352.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes.;"
LysR family transcriptional regulator
S18_scaffold_331_curated_2
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122..775)
DNA (654bp) protein (218aa)
HAD family hydrolase n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DW69_PSEMN rbh
HAD family hydrolase rbh
HAD family hydrolase {ECO:0000313|EMBL:AEB57387.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_331_curated_3
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(775..1761)
DNA (987bp) protein (329aa)
ABC transporter-like protein n=1 Tax=Pseudomonas mendocina DLHK RepID=J7UBZ5_PSEME rbh
Spermidine/putrescine ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFJ91572.1}; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 1-7.;"
ABC transporter-like protein rbh
S18_scaffold_331_curated_4
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1758..2552)
DNA (795bp) protein (265aa)
Binding-protein-dependent transport systems inner membrane component n=2 Tax=Pseudomonas mendocina RepID=A4XRX8_PSEMY rbh
binding-protein-dependent transport system inner membrane protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABP84094.1}; Flags: Precursor;; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
S18_scaffold_331_curated_5
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2539..3381)
DNA (843bp) protein (281aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Pseudomonas mendocina (strain ymp) RepID=A4XRX9_PSEMY rbh
binding-protein-dependent transport system inner membrane protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABP84095.1}; Flags: Precursor;; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
S18_scaffold_331_curated_6
Pseudomonas sp. EGD-AK9, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3378..4184)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. EGD-AK9 RepID=U1ZT96_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:ERI50348.1}; TaxID=1386078 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. EGD-AK9.;"
hypothetical protein rbh
S18_scaffold_331_curated_7
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4490..5548)
DNA (1059bp) protein (353aa)
ABC-type Fe3+ transport system periplasmic component-like protein n=2 Tax=Pseudomonas mendocina RepID=A4XRY1_PSEMY rbh
Fe3+ ABC transporter periplasmic component-like protein rbh
ABC-type Fe3+ transport system periplasmic component-like protein {ECO:0000313|EMBL:ABP84097.1}; Flags: Precursor;; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
S18_scaffold_331_curated_8
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5863..6579
DNA (717bp) protein (239aa)
Transcriptional regulator, GntR family n=2 Tax=Pseudomonas mendocina RepID=A4XRY2_PSEMY rbh
GntR family transcriptional regulator rbh
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABP84098.1}; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
S18_scaffold_331_curated_9
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6741..7103
DNA (363bp) protein (121aa)
dehydrogenase n=1 Tax=Pseudomonas mendocina RepID=UPI00035C73DE
Dehydrogenase {ECO:0000313|EMBL:EZH76885.1}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes AD6.;"
DGPFAETKE family protein
S18_scaffold_331_curated_10
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7135..7917
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002F3CEBC rbh
Uncharacterized protein {ECO:0000313|EMBL:KJU76892.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes.;"
hypothetical protein rbh
S18_scaffold_331_curated_11
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7939..8361
DNA (423bp) protein (141aa)
Ketosteroid isomerase n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1T542_PSEME
Ketosteroid isomerase {ECO:0000313|EMBL:ERH53591.1}; TaxID=1390370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina EGD-AQ5.;"
ketosteroid isomerase-like protein
S18_scaffold_331_curated_12
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8371..8907)
DNA (537bp) protein (179aa)
Sel1 domain-containing protein n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DW79_PSEMN rbh
Sel1 domain-containing protein rbh
Sel1 domain-containing protein {ECO:0000313|EMBL:AEB57397.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_331_curated_13
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9059..10186
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002D2FDBE rbh
Uncharacterized protein {ECO:0000313|EMBL:KFJ91565.1}; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 1-7.;"
peptidase M14, carboxypeptidase A
S18_scaffold_331_curated_14
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10328..11587)
DNA (1260bp) protein (420aa)
porin n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002E66F02 rbh
Porin {ECO:0000313|EMBL:ERH53594.1}; TaxID=1390370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina EGD-AQ5.;"
outer membrane porin rbh
S18_scaffold_331_curated_15
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12270..12728)
DNA (459bp) protein (153aa)
MerR family transcriptional regulator n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002DE79BD
MerR family transcriptional regulator {ECO:0000313|EMBL:EZH77470.1}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes AD6.;"
MerR family transcriptional regulator
S18_scaffold_331_curated_16
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12806..13384
DNA (579bp) protein (193aa)
NADPH-dependent FMN reductase n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DW84_PSEMN rbh
NADPH-dependent FMN reductase rbh
NADPH-dependent FMN reductase {ECO:0000313|EMBL:AEB57402.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_331_curated_17
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13563..14687)
DNA (1125bp) protein (375aa)
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
Aminomethyltransferase n=1 Tax=Pseudomonas mendocina DLHK RepID=J7UBX5_PSEME rbh
glycine cleavage system T protein rbh
S18_scaffold_331_curated_18
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14863..17715)
DNA (2853bp) protein (951aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
Glycine dehydrogenase (decarboxylating) n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DW87_PSEMN rbh
glycine dehydrogenase rbh
S18_scaffold_331_curated_19
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17725..18108)
DNA (384bp) protein (128aa)
Glycine cleavage system H protein n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1SP51_PSEME
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1390370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina EGD-AQ5.;"
gcvH3; glycine cleavage system protein H
S18_scaffold_331_curated_20
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18438..18989
DNA (552bp) protein (184aa)
Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000393};; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 1-7.;"
Superoxide dismutase [Cu-Zn] n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DW89_PSEMN rbh
superoxide dismutase, copper/zinc binding protein rbh
S18_scaffold_331_curated_21
unknown

Not on your lists

comp(18908..19093)
DNA (186bp) protein (62aa)

This feature has no annotations

S18_scaffold_331_curated_22
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19130..20650)
DNA (1521bp) protein (507aa)
Putative PAS/PAC sensor protein n=1 Tax=Pseudomonas mendocina (strain ymp) RepID=A4XRZ7_PSEMY rbh
putative PAS/PAC sensor protein rbh
Putative PAS/PAC sensor protein {ECO:0000313|EMBL:ABP84113.1}; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
S18_scaffold_331_curated_23
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20724..20921
DNA (198bp) protein (66aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas mendocina (strain ymp) RepID=A4XRZ8_PSEMY
Uncharacterized protein {ECO:0000313|EMBL:EZH77478.1}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes AD6.;"
hypothetical protein
S18_scaffold_331_curated_24
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21111..21809)
DNA (699bp) protein (233aa)
deoxyribonuclease I (EC:3.1.21.1) rbh
Deoxyribonuclease I {ECO:0000313|EMBL:ABP84115.1}; EC=3.1.21.1 {ECO:0000313|EMBL:ABP84115.1};; Flags: Precursor;; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain ymp).;"
Deoxyribonuclease I n=1 Tax=Pseudomonas mendocina (strain ymp) RepID=A4XRZ9_PSEMY rbh
S18_scaffold_331_curated_25
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21921..23372)
DNA (1452bp) protein (484aa)
sodium:solute symporter n=1 Tax=Pseudomonas mendocina RepID=UPI00036BBC8C rbh
putative sodium/solute symporter rbh
Putative sodium/solute symporter {ECO:0000313|EMBL:AEB57412.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_331_curated_26
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23741..24442)
DNA (702bp) protein (234aa)
protein-disulfide isomerase n=1 Tax=Pseudomonas mendocina RepID=UPI000372EE39 rbh
protein-disulfide isomerase-like protein rbh
Protein-disulfide isomerase-like protein {ECO:0000313|EMBL:AEB57414.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_331_curated_27
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24685..25815)
DNA (1131bp) protein (377aa)
MscS mechanosensitive ion channel n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DW97_PSEMN rbh
mechanosensitive ion channel protein MscS rbh
MscS mechanosensitive ion channel {ECO:0000313|EMBL:AEB57415.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
S18_scaffold_331_curated_trna_1
unknown

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comp(26010..26080)
DNA (71bp)
transferRNA Gly
S18_scaffold_331_curated_28
Pseudomonas sp. USM 4-55, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26166..27053)
DNA (888bp) protein (296aa)
R-3-hydroxyacyl-ACP:CoA transferase n=1 Tax=Pseudomonas sp. USM 4-55 RepID=B7SJG2_9PSED rbh
R-3-hydroxyacyl-ACP:CoA transferase {ECO:0000313|EMBL:ACA03779.1}; TaxID=502787 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. USM 4-55.;"
alpha/beta hydrolase fold protein rbh
S18_scaffold_331_curated_29
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27444..28136)
DNA (693bp) protein (231aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1390370 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina EGD-AQ5.;"
ribosomal small subunit pseudouridine synthase A (EC:5.4.99.-) rbh
Pseudouridine synthase n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1UF10_PSEME rbh
Displaying items 1-30 of 39 in total

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