ggKbase | organisms

Advanced Search

S24_Micrococcoles_71_12_curated

FUEL_CELL_S24_Micrococcales_71_1

In projects: FUEL_CELL_S24 | fuel_cell_curated

Consensus taxonomy: Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Metagenomic Context

Parent: FUEL_CELL_S24_Micrococcoles-rel_71_12 Manually curated genome
Original version: FUEL_CELL_S24_Micrococcoles-rel_71_12

Properties

Avg. coverage: 1.00 Longest contig: 67.71 Kbp Bin length: 4.04 Mbp GC content: 71.11 %

Contigs count: 358 Features count: 3926 rRNAs count: 0 tRNAs count: 42

Genome completeness

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 MC: 1 ASCG 13 / 38 MC: 2

Displaying items 351-358 of 358 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
S24_scaffold_365_curated Order: Micrococcales (55.56%)	27	29019 bp	69.95	1.00	81.52
S24_scaffold_3922_curated Order: Micrococcales (83.33%)	6	3797 bp	71.95	1.00	92.78
S24_scaffold_1470_curated Genus: Cellulomonas (63.64%)	11	8057 bp	71.40	1.00	90.38
S24_scaffold_1775_curated Class: Actinobacteria (85.71%)	7	7315 bp	70.23	1.00	92.65
S24_scaffold_381_curated Class: Actinobacteria (68.97%)	29	28041 bp	68.87	1.00	89.52
S24_scaffold_382_curated Genus: Cellulomonas (66.67%)	27	27940 bp	71.78	1.00	90.11
S24_scaffold_387_curated Order: Micrococcales (55.56%)	27	27671 bp	71.44	1.00	89.98
S24_scaffold_9296_curated Species: Sanguibacter keddieii (50%)	2	1962 bp	71.46	1.00	82.87

Displaying items 351-358 of 358 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

ggKBase is a service designed to assist in analyzing and integrating *omic data (e.g. metagenomics, proteomics, etc). The source code for ggKBase will be made available as an open source project.
You are encouraged to contact the development staff with issues related to usage of ggKBase. The ggKBase development staff as well as the members of the Banfield lab at the University of California, Berkeley, are not available to support outside research/computation requests.
We aim to make ggKBase the best resource possible and to make it accurate and available at all times; however, we cannot guarantee the correctness of any results, validity or integrity of the data, or the availability of the service: We cannot be held responsible for decisions made, losses suffered, or damages that resulted from using data from ggKBase.
We respect our user’s privacy and will not share any user registration details with anyone other than the ggKBase developers.
ggKBase is a social web site – it has mechanisms to share results and comments with other users of the system. As a registered user of ggKBase, you agree to respect the rights of other users and conduct yourself in a professional manner with courtesy and collegiality towards your fellow users. We reserve the right to delete users found not upholding these standards.
We reserve the right to reject inappropriate data submissions. As a User, you agree not to submit data that is not your own and you agree that any data you do submit is being submitted specifically for the purposes of analyzing using ggKBase.
ggKBase and its underlying servers and systems are properly administrated and backed up. However, ggKBase is not responsible for data loss or work loss as a result of system or hardware failures or criminal activity.
We reserve the right to perform additional data analysis to improve ggKBase, and we will not release user-contributed data without consent of the user.
Users of ggKBase are expected to properly cite any published work.
We reserve the right at any time to modify the Terms of Service for ggKBase. Modifications to these Terms will be effective immediately and we will make a reasonable effort to contact users via email of any changes. If you continue using ggKBase after an amendment to the Terms of Service, we assume you have read and accepted the changes.