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OR_07242016_13_scaffold_35

Search features with annotation key words

Displaying items 1-30 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07242016_13_scaffold_35_1
unknown

Not on your lists

comp(1..69)
DNA (69bp) protein (23aa)

This feature has no annotations

OR_07242016_13_scaffold_35_2
Xanthomonas perforans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

405..2516
DNA (2112bp) protein (704aa)
Lipopolysaccharide biosynthesis protein Tax=Xanthomonas perforans 91-118 RepID=F0BWP0_9XANT
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:EGD12630.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas perforans 91-118.;"
hypothetical protein
OR_07242016_13_scaffold_35_3
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2513..5611)
DNA (3099bp) protein (1033aa)
Glycosyl transferase group 1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C260_NITHN
group 1 glycosyl transferase
Tax=CG_Hydro_01
OR_07242016_13_scaffold_35_4
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5608..6987)
DNA (1380bp) protein (460aa)
Uncharacterized protein Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P6S1_AROAE
hypothetical protein
Tax=RBG_16_Gallionellales_56_9_curated
OR_07242016_13_scaffold_35_5

Not on your lists

comp(7111..7653)
DNA (543bp) protein (181aa)
rfbC; dTDP-4-deoxyrhamnose-3,5-epimerase (EC:5.1.3.13)
Uncharacterized protein Tax=uncultured bacterium RepID=K2DH23_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD96641.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
OR_07242016_13_scaffold_35_6
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7653..8549)
DNA (897bp) protein (299aa)
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
Glucose-1-phosphate thymidylyltransferase Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JIV2_BURVG
OR_07242016_13_scaffold_35_7
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8563..9477)
DNA (915bp) protein (305aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
Uncharacterized protein Tax=Thauera terpenica 58Eu RepID=S9ZH00_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ13881.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
OR_07242016_13_scaffold_35_8
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9474..9731)
DNA (258bp) protein (86aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=E6QV53_9ZZZZ
hypothetical protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
OR_07242016_13_scaffold_35_9
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9979..11055)
DNA (1077bp) protein (359aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
dTDP-glucose 4,6-dehydratase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHW8_AZOSU
dTDP-glucose 4,6-dehydratase
OR_07242016_13_scaffold_35_10
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11052..11795)
DNA (744bp) protein (248aa)
ABC transporter related protein Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KY19_HALNC
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ACX95342.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_35_11
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11798..12589)
DNA (792bp) protein (264aa)
ABC-2 type transporter Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KY18_HALNC
ABC transporter
ABC-2 type transporter {ECO:0000313|EMBL:ACX95341.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_35_trna_4
unknown

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comp(12923..12996)
DNA (74bp)
transferRNA Asp
OR_07242016_13_scaffold_35_trna_3
unknown

Not on your lists

comp(13010..13082)
DNA (73bp)
transferRNA Val
OR_07242016_13_scaffold_35_trna_2
unknown

Not on your lists

comp(13087..13159)
DNA (73bp)
transferRNA Gly
OR_07242016_13_scaffold_35_12
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13314..15167)
DNA (1854bp) protein (618aa)
Sodium/hydrogen exchanger Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KY09_HALNC
sodium/hydrogen exchanger
Sodium/hydrogen exchanger {ECO:0000313|EMBL:ACX95332.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_35_13
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15211..16296)
DNA (1086bp) protein (362aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Quinolinate synthetase complex, A subunit Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KY08_HALNC
quinolinate synthetase complex subunit alpha
OR_07242016_13_scaffold_35_14
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16366..18156)
DNA (1791bp) protein (597aa)
Aspartate--tRNA ligase Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KY07_HALNC
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:ACX95330.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
aspartyl-tRNA synthetase
OR_07242016_13_scaffold_35_15
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18196..18873)
DNA (678bp) protein (226aa)
Putative uncharacterized protein Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KY06_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX95329.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_35_16
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18889..19332)
DNA (444bp) protein (148aa)
Putative uncharacterized protein Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KY05_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX95328.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_35_17
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19486..21492)
DNA (2007bp) protein (669aa)
Methyl-accepting chemotaxis sensory transducer Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KY03_HALNC
methyl-accepting chemotaxis sensory transducer
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ACX95326.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_35_18
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21591..22217)
DNA (627bp) protein (209aa)
HPP family protein Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KY02_HALNC
HPP family protein
HPP family protein {ECO:0000313|EMBL:ACX95325.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_35_19
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22214..22801)
DNA (588bp) protein (196aa)
CBS domain containing membrane protein Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KY01_HALNC
hypothetical protein
CBS domain containing membrane protein {ECO:0000313|EMBL:ACX95324.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_35_20
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22917..23111)
DNA (195bp) protein (65aa)
Putative uncharacterized protein Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KY00_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX95323.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_35_21
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23189..23854)
DNA (666bp) protein (222aa)
Putative uncharacterized protein Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXZ9_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX95322.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_35_22
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23984..24844
DNA (861bp) protein (287aa)
Short-chain dehydrogenase/reductase SDR Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXZ8_HALNC
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACX95321.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_35_23
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24844..26289
DNA (1446bp) protein (482aa)
Cardiolipin synthase A {ECO:0000256|SAAS:SAAS00016767}; EC=2.7.8.- {ECO:0000256|SAAS:SAAS00017006};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Phospholipase D/Transphosphatidylase Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXZ7_HALNC
phospholipase D/transphosphatidylase
OR_07242016_13_scaffold_35_24
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26468..27340)
DNA (873bp) protein (291aa)
Sel1 domain protein repeat-containing protein Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXZ6_HALNC
Sel1 domain-containing protein repeat-containing protein
Sel1 domain protein repeat-containing protein {ECO:0000313|EMBL:ACX95319.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_07242016_13_scaffold_35_25
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27565..29244
DNA (1680bp) protein (560aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
DNA primase Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXZ5_HALNC
DNA primase
OR_07242016_13_scaffold_35_26
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29356..31173
DNA (1818bp) protein (606aa)
RNA polymerase sigma factor RpoD Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXZ4_HALNC
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
RNA polymerase sigma-70 subunit RpoD
OR_07242016_13_scaffold_35_trna_1
unknown

Not on your lists

31218..31291
DNA (74bp)
transferRNA Met
Displaying items 1-30 of 85 in total

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