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GWD2_RBX1_39_127_gwd2_scaffold_706

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWD2_RBX1_39_127_gwd2_scaffold_706_1
unknown

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396..2540
DNA (2145bp) protein (715aa)
id=2097705 bin=GWD2_RBX1-related_39_127 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
id=2097705 bin=GWD2_RBX1-related_39_127 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWD2_RBX1_39_127_gwd2_scaffold_706_2
unknown

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comp(3020..3136)
DNA (117bp) protein (39aa)

This feature has no annotations

GWD2_RBX1_39_127_gwd2_scaffold_706_3
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

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3338..3907
DNA (570bp) protein (190aa)
Integrase catalytic subunit id=2097706 bin=GWD2_RBX1-related_39_127 species=unknown genus=unknown taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
putative transposase Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
integrase catalytic subunit
GWD2_RBX1_39_127_gwd2_scaffold_706_4
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(4055..4336)
DNA (282bp) protein (94aa)
TnAtcArs resolvase id=2097708 bin=GWD2_RBX1-related_39_127 species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
TnAtcArs resolvase Tax=GWF2_RBX1_38_17_curated
tnpR; Transposon Tn21 resolvase
GWD2_RBX1_39_127_gwd2_scaffold_706_5
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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4523..5329
DNA (807bp) protein (269aa)
id=1980862 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1980862 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_706_6
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(5973..6623)
DNA (651bp) protein (217aa)
Putative uncharacterized protein id=2097711 bin=GWD2_RBX1-related_39_127 species=Serpula lacrymans genus=Serpula taxon_order=Boletales taxon_class=Agaricomycetes phylum=Basidiomycota tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
Putative uncharacterized protein Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_706_7
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(6777..6995)
DNA (219bp) protein (73aa)
id=24611038 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
id=24611038 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_706_8
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(6985..7554)
DNA (570bp) protein (190aa)
id=1980866 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1980866 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_706_trna_1
unknown

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7796..7868
DNA (73bp)
transferRNA
GWD2_RBX1_39_127_gwd2_scaffold_706_9
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(7934..8344)
DNA (411bp) protein (137aa)
id=1980867 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1980867 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_706_10
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(8359..8694)
DNA (336bp) protein (112aa)
id=1980869 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1980869 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_706_11
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(8685..9269)
DNA (585bp) protein (195aa)
RNA polymerase, sigma-24 subunit, RpoE id=1980870 bin=GWE2_RBX1_39_32 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=GWF2_RBX1_38_17_curated
ECF subfamily RNA polymerase sigma-24 factor
GWD2_RBX1_39_127_gwd2_scaffold_706_12
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

9684..10481
DNA (798bp) protein (266aa)
id=1980876 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1980876 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_706_13
GWF2_Melainabacteria_32_7_curated, Melainabacteria, Bacteria

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10675..12120
DNA (1446bp) protein (482aa)
pyruvate kinase; K00873 pyruvate kinase [EC:2.7.1.40] id=24611044 bin=RAAC11 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=RAAC11 organism_group=Unknown_CP
pyruvate kinase; K00873 pyruvate kinase [EC:2.7.1.40] Tax=GWF2_Melainabacteria_32_7_curated
pyruvate kinase
GWD2_RBX1_39_127_gwd2_scaffold_706_14
CG_Elusi_02, Elusimicrobia, Bacteria

Not on your lists

12209..12880
DNA (672bp) protein (224aa)
type 11 methyltransferase id=24611045 bin=RAAC11 species=Lactococcus raffinolactis genus=Lactococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP
type 11 methyltransferase Tax=CG_Elusi_02
Methyltransferase type 11
GWD2_RBX1_39_127_gwd2_scaffold_706_15
unknown

Not on your lists

comp(12911..13234)
DNA (324bp) protein (108aa)
id=24611046 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
id=24611046 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
GWD2_RBX1_39_127_gwd2_scaffold_706_16
unknown

Not on your lists

13368..13712
DNA (345bp) protein (115aa)
id=24611047 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
id=24611047 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
GWD2_RBX1_39_127_gwd2_scaffold_706_trna_3
unknown

Not on your lists

comp(13906..13978)
DNA (73bp)
transferRNA
GWD2_RBX1_39_127_gwd2_scaffold_706_trna_2
unknown

Not on your lists

comp(14014..14086)
DNA (73bp)
transferRNA
GWD2_RBX1_39_127_gwd2_scaffold_706_17
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(14118..14951)
DNA (834bp) protein (278aa)
Putative uncharacterized protein id=2097751 bin=GWD2_RBX1-related_39_127 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
hypothetical protein; K06864 uncharacterized protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_706_18
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(15055..15330)
DNA (276bp) protein (92aa)
id=1961813 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1961813 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_706_19
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists


comp(15444..16451)
DNA (1008bp) protein (336aa)
glycoprotease family metalloendopeptidase (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=GWF2_RBX1_38_17_curated
glycoprotease family metalloendopeptidase (EC:3.4.24.57)
Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp id=1961814 bin=GWE2_RBX1_39_32 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_706_20
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(16453..16905)
DNA (453bp) protein (151aa)
N-acetylglutamate synthase id=1961817 bin=GWE2_RBX1_39_32 species=Methanolobus psychrophilus genus=Methanolobus taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
N-acetylglutamate synthase Tax=GWF2_RBX1_38_17_curated
N-acetylglutamate synthase
GWD2_RBX1_39_127_gwd2_scaffold_706_21
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(17028..19061)
DNA (2034bp) protein (678aa)
DNA ligase, NAD-dependent (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=GWF2_RBX1_38_17_curated
DNA ligase, NAD-dependent (EC:6.5.1.2)
DNA ligase id=2097758 bin=GWD2_RBX1-related_39_127 species=unknown genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWD2_RBX1_39_127_gwd2_scaffold_706_22
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(19148..20059)
DNA (912bp) protein (304aa)
Uncharacterized protein id=2097760 bin=GWD2_RBX1-related_39_127 species=Thermoanaerobacterium saccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_706_23
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(20100..20459)
DNA (360bp) protein (120aa)
Rna binding protein id=1961827 bin=GWE2_RBX1_39_32 species=GWF2_TM6_27_16 genus=GWF2_TM6_27_16 taxon_order=GWF2_TM6_27_16 taxon_class=GWF2_TM6_27_16 phylum=TM6 tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
rpbA; putative RNA-binding protein RbpA Tax=GWF2_RBX1_38_17_curated
rpbA; putative RNA-binding protein RbpA
GWD2_RBX1_39_127_gwd2_scaffold_706_24
GWF2_RBX1_38_17_curated, RBX1, Bacteria

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comp(20701..21057)
DNA (357bp) protein (119aa)
Rna binding protein id=2685740 bin=GWF2_OP9-related_38_17 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
RNA-binding domain-containing protein Tax=GWF2_RBX1_38_17_curated
RNA-binding domain-containing protein
GWD2_RBX1_39_127_gwd2_scaffold_706_25
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(21622..21714)
DNA (93bp) protein (31aa)
two component system sensor histidine kinase (EC:2.7.13.3) id=24611056 bin=RAAC11 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RAAC11 organism_group=Unknown_CP
two component system sensor histidine kinase (EC:2.7.13.3) Tax=GWF2_RBX1_38_17_curated
Displaying 28 items

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