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GWD2_RBX1_39_127_gwd2_scaffold_116

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Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWD2_RBX1_39_127_gwd2_scaffold_116_trna_5
unknown

Not on your lists

comp(164..238)
DNA (75bp)
transferRNA
GWD2_RBX1_39_127_gwd2_scaffold_116_1
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(449..1528)
DNA (1080bp) protein (360aa)
RNA polymerase sigma factor id=1756309 bin=GWD2_RBX1-related_39_127 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=GWF2_RBX1_38_17_curated
sigA; RNA polymerase sigma factor RpoD
GWD2_RBX1_39_127_gwd2_scaffold_116_2
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(1570..3381)
DNA (1812bp) protein (604aa)
DNA primase id=1756311 bin=GWD2_RBX1-related_39_127 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
DNA primase, catalytic core Tax=GWF2_RBX1_38_17_curated
DNA primase, catalytic core
GWD2_RBX1_39_127_gwd2_scaffold_116_3
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(3472..6264)
DNA (2793bp) protein (931aa)
ppsA2; pyruvate phosphate dikinase; K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1] Tax=GWF2_RBX1_38_17_curated
Pyruvate phosphate dikinase id=1756313 bin=GWD2_RBX1-related_39_127 species=Brachyspira pilosicoli genus=Brachyspira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
ppsA2; pyruvate phosphate dikinase
GWD2_RBX1_39_127_gwd2_scaffold_116_trna_4
unknown

Not on your lists

comp(6336..6408)
DNA (73bp)
transferRNA
GWD2_RBX1_39_127_gwd2_scaffold_116_4
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(6539..6877)
DNA (339bp) protein (113aa)
Iojap domain protein id=1973895 bin=GWE2_RBX1_39_32 species=Shewanella amazonensis genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
iojap domain-containing protein; K09710 ribosome-associated protein Tax=GWF2_RBX1_38_17_curated
iojap domain-containing protein
GWD2_RBX1_39_127_gwd2_scaffold_116_5
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(6935..8413)
DNA (1479bp) protein (493aa)
Cell envelope-related transcriptional attenuator id=1973893 bin=GWE2_RBX1_39_32 species=Thermanaerovibrio acidaminovorans genus=Thermanaerovibrio taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
cell envelope-related transcriptional attenuator Tax=GWF2_RBX1_38_17_curated
cell envelope-related transcriptional attenuator
GWD2_RBX1_39_127_gwd2_scaffold_116_6
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(8428..9048)
DNA (621bp) protein (207aa)
Metal dependent phosphohydrolase id=1973891 bin=GWE2_RBX1_39_32 species=[Clostridium] stercorarium genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hydrolase Tax=GWF2_RBX1_38_17_curated
hydrolase
GWD2_RBX1_39_127_gwd2_scaffold_116_7
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

9450..10406
DNA (957bp) protein (319aa)
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase (EC:2.7.7.23 2.3.1.157)
Bifunctional protein GlmU id=4153425 bin=GWF2_OP9-related_38_17 species=Haloplasma contractile genus=Haloplasma taxon_order=Haloplasmatales taxon_class=unknown phylum=unknown tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate
GWD2_RBX1_39_127_gwd2_scaffold_116_8
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

10655..11269
DNA (615bp) protein (205aa)
transcriptional regulator id=24610718 bin=RAAC11 species=Chlorobaculum parvum genus=Chlorobaculum taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=RAAC11 organism_group=Unknown_CP
transcriptional regulator Tax=GWF2_RBX1_38_17_curated
transcriptional regulator
GWD2_RBX1_39_127_gwd2_scaffold_116_9
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(11276..12343)
DNA (1068bp) protein (356aa)
site-specific DNA-methyltransferase; K07318 adenine-specific DNA-methyltransferase [EC:2.1.1.72] Tax=GWF2_RBX1_38_17_curated
Site-specific DNA-methyltransferase id=1973880 bin=GWE2_RBX1_39_32 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
site-specific DNA-methyltransferase
GWD2_RBX1_39_127_gwd2_scaffold_116_10
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

12737..13108
DNA (372bp) protein (124aa)
id=1973879 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1973879 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_116_11
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

13177..13716
DNA (540bp) protein (180aa)
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] Tax=GWF2_RBX1_38_17_curated
2'-5' RNA ligase id=1973877 bin=GWE2_RBX1_39_32 species=unknown genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_116_12
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

14012..14383
DNA (372bp) protein (124aa)
id=1973876 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1973876 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_116_13
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(14393..16195)
DNA (1803bp) protein (601aa)
TPR repeat-containing protein Tax=GWF2_RBX1_38_17_curated
Uncharacterized protein id=1973873 bin=GWE2_RBX1_39_32 species=Microcystis aeruginosa genus=Microcystis taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
TPR repeat-containing protein
GWD2_RBX1_39_127_gwd2_scaffold_116_14
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(16195..20700)
DNA (4506bp) protein (1502aa)
id=1973872 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1973872 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_116_15
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(20690..21235)
DNA (546bp) protein (182aa)
id=1973871 bin=GWE2_RBX1_39_32 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
id=1973871 Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_116_16
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(21412..21633)
DNA (222bp) protein (74aa)
SirA-like id=1973870 bin=GWE2_RBX1_39_32 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein Tax=GWF2_RBX1_38_17_curated
hypothetical protein
GWD2_RBX1_39_127_gwd2_scaffold_116_17
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

21956..22423
DNA (468bp) protein (156aa)
Hydrogenase maturation protease id=1973868 bin=GWE2_RBX1_39_32 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
Hydrogenase maturation protease Tax=GWF2_RBX1_38_17_curated
GWD2_RBX1_39_127_gwd2_scaffold_116_18
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

22426..24006
DNA (1581bp) protein (527aa)
FAD dependent oxidoreductase id=1973867 bin=GWE2_RBX1_39_32 species=Clostridium carboxidivorans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein; K07137 Tax=GWF2_RBX1_38_17_curated
FAD dependent oxidoreductase
GWD2_RBX1_39_127_gwd2_scaffold_116_19
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(24009..24416)
DNA (408bp) protein (136aa)
ATP synthase F1 subunit epsilon; K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14] Tax=GWF2_RBX1_38_17_curated
ATP synthase epsilon chain id=1973865 bin=GWE2_RBX1_39_32 species=Clostridium hathewayi genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
ATP synthase F1 subunit epsilon
GWD2_RBX1_39_127_gwd2_scaffold_116_20
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(24433..25827)
DNA (1395bp) protein (465aa)
atpD-2; ATP synthase F0F1 subunit beta (EC:3.6.3.14); K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14] Tax=GWF2_RBX1_38_17_curated
atpD-2; ATP synthase F0F1 subunit beta (EC:3.6.3.14)
ATP synthase subunit beta id=1756383 bin=GWD2_RBX1-related_39_127 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWD2_RBX1_39_127_gwd2_scaffold_116_21
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(25867..26724)
DNA (858bp) protein (286aa)
ATP synthase F0F1 subunit gamma (EC:3.6.3.15); K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14] Tax=GWF2_RBX1_38_17_curated
ATP synthase F0F1 subunit gamma (EC:3.6.3.15)
ATP synthase gamma chain id=1973861 bin=GWE2_RBX1_39_32 species=Chlorobium chlorochromatii genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_116_22
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(26724..28238)
DNA (1515bp) protein (505aa)
atpA; ATP synthase F0F1 subunit alpha (EC:3.6.3.14); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14] Tax=GWF2_RBX1_38_17_curated
atpA; ATP synthase F0F1 subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha id=1756390 bin=GWD2_RBX1-related_39_127 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
GWD2_RBX1_39_127_gwd2_scaffold_116_23
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(28321..28851)
DNA (531bp) protein (177aa)
F0F1 ATP synthase subunit delta; K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14] Tax=GWF2_RBX1_38_17_curated
ATP synthase subunit delta id=4153444 bin=GWF2_OP9-related_38_17 species=Clostridium beijerinckii genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
F0F1 ATP synthase subunit delta
GWD2_RBX1_39_127_gwd2_scaffold_116_24
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(28866..29387)
DNA (522bp) protein (174aa)
atpF; ATP synthase F0 complex subunit beta (EC:3.6.3.14) Tax=GWF2_RBX1_38_17_curated
atpF; ATP synthase F0 complex subunit beta (EC:3.6.3.14)
ATP synthase F0 complex subunit beta id=1973855 bin=GWE2_RBX1_39_32 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
GWD2_RBX1_39_127_gwd2_scaffold_116_25
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(29387..29644)
DNA (258bp) protein (86aa)
ATP synthase F0 subunit C; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14] Tax=GWF2_RBX1_38_17_curated
ATP synthase F0, C subunit id=1973813 bin=GWE2_RBX1_39_32 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
ATP synthase F0 subunit C
GWD2_RBX1_39_127_gwd2_scaffold_116_26
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(29660..30121)
DNA (462bp) protein (154aa)
F1FO ATPase c1 subunit id=1756402 bin=GWD2_RBX1-related_39_127 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
ATP synthase, F0 subunit c Tax=GWF2_RBX1_38_17_curated
ATP synthase, F0 subunit c
GWD2_RBX1_39_127_gwd2_scaffold_116_27
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(30235..31056)
DNA (822bp) protein (274aa)
atpB; F0F1 ATP synthase subunit A; K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14] Tax=GWF2_RBX1_38_17_curated
ATP synthase subunit a id=1973804 bin=GWE2_RBX1_39_32 species=Thermosipho africanus genus=Thermosipho taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
atpB; F0F1 ATP synthase subunit A
GWD2_RBX1_39_127_gwd2_scaffold_116_28
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(31132..31503)
DNA (372bp) protein (124aa)
id=24610738 bin=RAAC11 tax=RAAC11 organism_group=Unknown_CP
id=24610738 Tax=GWF2_RBX1_38_17_curated
Displaying items 1-30 of 71 in total

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