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gwf2_scaffold_1292

Alias: PER_GWF2_33_10_5

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_1292_1
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(1..201)
DNA (201bp) protein (67aa)
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
no description (db=Gene3D db_id=G3DSA:3.30.980.10 from=2 to=67 evalue=1.7e-06)
ThrRS/AlaRS common domain (db=superfamily db_id=SSF55186 from=2 to=66 evalue=6.8e-10 interpro_id=IPR018163 interpro_description=Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO=Molecular Function: nucleotide binding (GO:0000166))
gwf2_scaffold_1292_2
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(349..924)
DNA (576bp) protein (192aa)
CYTH domain Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=15 to=28)
CYTH-like phosphatases (db=superfamily db_id=SSF55154 from=2 to=166 evalue=4.3e-19 interpro_id=IPR023577 interpro_description=CYTH-like domain)
(db=HMMPfam db_id=PF01928 from=1 to=149 evalue=7.7e-11 interpro_id=IPR008172 interpro_description=CYTH domain GO=Biological Process: phosphate-containing compound metabolic process (GO:0006796))
gwf2_scaffold_1292_3
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(963..2861)
DNA (1899bp) protein (633aa)
Parallel beta-helix repeat Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=300 to=315)
Pectin lyase-like (db=superfamily db_id=SSF51126 from=424 to=631 evalue=4.7e-14 interpro_id=IPR011050 interpro_description=Pectin lyase fold/virulence factor)
no description (db=HMMSmart db_id=SM00710 from=217 to=239 evalue=850.0 interpro_id=IPR006626 interpro_description=Parallel beta-helix repeat)
gwf2_scaffold_1292_4
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(2931..3395)
DNA (465bp) protein (155aa)
6-pyruvoyl tetrahydropterin synthase, 6-pyruvoyl tetrahydrobiopterin synthase {ECO:0000313|EMBL:KKP39631.1}; EC=4.2.3.12 {ECO:0000313|EMBL:KKP39631.1};; TaxID=1619065 species="Bacteria; Peregrinibacte
6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Kosmotoga olearia (strain TBF 19.5.1) RepID=C5CGV8_KOSOT
6-pyruvoyl tetrahydropterin synthase
no description (db=Gene3D db_id=G3DSA:3.30.479.10 from=1 to=154 evalue=1.8e-30)
gwf2_scaffold_1292_5
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(3405..3680)
DNA (276bp) protein (92aa)
no description Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
(db=HMMPfam db_id=PF04193 from=6 to=58 evalue=1.7e-12)
gwf2_scaffold_1292_6
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(3746..4315)
DNA (570bp) protein (190aa)
O-methyltransferase family 3 n=1 Tax=Halomonas sp. TD01 RepID=F7SS99_9GAMM
putative O-methyltransferase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
O-methyltransferase
seg (db=Seg db_id=seg from=29 to=46)
gwf2_scaffold_1292_7
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(4312..5151)
DNA (840bp) protein (280aa)
folP; dihydropteroate synthase (EC:2.5.1.15); K00796 dihydropteroate synthase [EC:2.5.1.15] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
folP; dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase n=1 Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI0002890477
DHPS_1 (db=PatternScan db_id=PS00792 from=10 to=25 evalue=0.0 interpro_id=IPR000489 interpro_description=Pterin-binding GO=Biological Process: pteridine-containing compound metabolic process (GO:0042558))
gwf2_scaffold_1292_8
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

5219..6028
DNA (810bp) protein (270aa)
id=5094233 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_1292_9
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(6015..6668)
DNA (654bp) protein (218aa)
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Non-canonical purine NTP pyrophosphatase n=1 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=A4XI65_CALS8
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
no description (db=Gene3D db_id=G3DSA:3.90.950.10 from=15 to=212 evalue=1.6e-38)
gwf2_scaffold_1292_10
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(6821..8821)
DNA (2001bp) protein (667aa)
O-antigen polymerase n=1 Tax=Cylindrospermopsis raciborskii CS-505 RepID=D4TFB6_9NOST
O-antigen polymerase {ECO:0000313|EMBL:KKP39637.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
Lipid A core--O-antigen ligase-like protein
seg (db=Seg db_id=seg from=12 to=23)
gwf2_scaffold_1292_11
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(8896..10233)
DNA (1338bp) protein (446aa)
Nucleotidyl transferase, bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase {ECO:0000313|EMBL:KKP39638.1}; EC=2.7.7.23 {ECO:0000313|EMBL:KKP39638.1};;
Nucleotidyl transferase n=1 Tax=Acidianus hospitalis (strain W1) RepID=F4B8A9_ACIHW
nucleotidyltransferase
coiled-coil (db=Coil db_id=coil from=175 to=196 evalue=NA)
gwf2_scaffold_1292_12
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

10348..11151
DNA (804bp) protein (268aa)
Glycosyltransferase, group 2 family protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QN98_9CLOT
glycosyltransferase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
glycosyltransferase
seg (db=Seg db_id=seg from=151 to=166)
gwf2_scaffold_1292_13
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(11152..12930)
DNA (1779bp) protein (593aa)
DNA mismatch repair protein MutL n=1 Tax=Caloramator australicus RC3 RepID=I7K503_9CLOT rbh
DNA mismatch repair protein MutL Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
DNA mismatch repair protein MutL
DNA_MISMATCH_REPAIR_1 (db=PatternScan db_id=PS00058 from=94 to=100 evalue=0.0 interpro_id=IPR014762 interpro_description=DNA mismatch repair, conserved site)
gwf2_scaffold_1292_14
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

13029..13823
DNA (795bp) protein (265aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=57 to=70)
gwf2_scaffold_1292_15
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(13829..14044)
DNA (216bp) protein (72aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=25 to=46 evalue=NA)
gwf2_scaffold_1292_16
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(14189..16936)
DNA (2748bp) protein (916aa)
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Caloramator australicus RC3 RepID=I7LFS5_9CLOT rbh
coiled-coil (db=Coil db_id=coil from=790 to=811 evalue=NA)
gwf2_scaffold_1292_17
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(17057..17941)
DNA (885bp) protein (295aa)
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UZU1_ROSS1
no description (db=Gene3D db_id=G3DSA:3.30.43.10 from=14 to=86 evalue=1.0e-11 interpro_id=IPR016167 interpro_description=FAD-binding, type 2, subdomain 1 GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762), Molecular Function: flavin adenine dinucleotide binding (GO:0050660), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_1292_18
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists


comp(17976..18203)
DNA (228bp) protein (76aa)
50S ribosomal protein L28 Rpl28 (Fragment) n=1 Tax=Pyrocystis lunula RepID=Q84UW0_PYRLU
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
rpmB; 50S ribosomal protein L28
(db=HMMPfam db_id=PF00830 from=3 to=61 evalue=2.2e-20 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf2_scaffold_1292_19
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

18416..19366
DNA (951bp) protein (317aa)
id=5094244 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_1292_20
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

19488..20345
DNA (858bp) protein (286aa)
serine-type D-Ala-D-Ala carboxypeptidase; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DSR8_DESRL
serine-type D-Ala-D-Ala carboxypeptidase
beta-lactamase/transpeptidase-like (db=superfamily db_id=SSF56601 from=1 to=283 evalue=3.6e-59 interpro_id=IPR012338 interpro_description=Beta-lactamase/transpeptidase-like)
gwf2_scaffold_1292_21
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

20377..21438
DNA (1062bp) protein (354aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase, phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000313|EMBL:KKP39648.1}; EC=2.7.8.13 {ECO:0000313|EMBL:KKP39648.1};; TaxID=1619065 species="B
mraY; phospho-N-acetylmuramoyl-pentapeptide transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L278_THERP
MRAY_2 (db=PatternScan db_id=PS01348 from=195 to=206 evalue=0.0 interpro_id=IPR018480 interpro_description=Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site)
gwf2_scaffold_1292_22
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(21453..23312)
DNA (1860bp) protein (620aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=244 to=272 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=122)
gwf2_scaffold_1292_23
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(23368..23940)
DNA (573bp) protein (191aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=3 Tax=Desulfitobacterium hafniense RepID=B8FZ92_DESHD
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
sigma-70 family RNA polymerase sigma factor
coiled-coil (db=Coil db_id=coil from=5 to=26 evalue=NA)
gwf2_scaffold_1292_24
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(23987..24880)
DNA (894bp) protein (298aa)
fructose-1,6-bisphosphatase (EC:3.1.3.11); K03841 fructose-1,6-bisphosphatase I [EC:3.1.3.11] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
fructose-1,6-bisphosphatase (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 1 n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=F16PA_GEOLS
FBPASE (db=PatternScan db_id=PS00124 from=241 to=253 evalue=0.0 interpro_id=IPR020548 interpro_description=Fructose-1,6-bisphosphatase, active site GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: phosphoric ester hydrolase activity (GO:0042578))
gwf2_scaffold_1292_25
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(24925..25584)
DNA (660bp) protein (220aa)
id=5094250 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_1292_26
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(25602..26564)
DNA (963bp) protein (321aa)
fructose-bisphosphate aldolase (EC:4.1.2.13); K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Fructose-bisphosphate aldolase n=2 Tax=Sulfobacillus acidophilus RepID=F8IBW1_SULAT
fbaB; Fructose-bisphosphate aldolase
(db=HMMPfam db_id=PF01791 from=40 to=294 evalue=2.1e-30 interpro_id=IPR002915 interpro_description=Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase GO=Molecular Function: lyase activity (GO:0016829))
gwf2_scaffold_1292_27
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(26650..27414)
DNA (765bp) protein (255aa)
FeS assembly ATPase SufC n=2 Tax=Cyanothece RepID=B7KCW9_CYAP7
FeS assembly ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
FeS assembly ATPase SufC
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=151 to=165 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
gwf2_scaffold_1292_28
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(27444..27860)
DNA (417bp) protein (139aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Psychroflexus RepID=K4IEK8_PSYTT
transcriptional regulator, Rrf2 family Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transcriptional regulator, Rrf2 family
rrf2_super: rrf2 family protein (putative (db=HMMTigr db_id=TIGR00738 from=1 to=133 evalue=5.3e-30 interpro_id=IPR000944 interpro_description=Transcription regulator Rrf2-like)
gwf2_scaffold_1292_29
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

28033..28599
DNA (567bp) protein (189aa)
Elongation factor P n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LEC8_SYNFM
elongation factor P; K02356 elongation factor P Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
elongation factor P
no description (db=Gene3D db_id=G3DSA:2.30.30.30 from=1 to=63 evalue=1.3e-05 interpro_id=IPR014722 interpro_description=Translation protein SH3-like, subgroup)
gwf2_scaffold_1292_30
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

28681..30666
DNA (1986bp) protein (662aa)
UvrABC system protein B n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A095_MAHA5 rbh
Excinuclease ABC subunit B, excinuclease ABC subunit B {ECO:0000313|EMBL:KKP39657.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
excinuclease ABC subunit B
uvrb: excinuclease ABC subunit B (db=HMMTigr db_id=TIGR00631 from=8 to=658 evalue=0.0 interpro_id=IPR004807 interpro_description=UvrABC system, B subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281), Biological Process: nucleotide-excision repair (GO:0006289), Molecular Function: excinuclease ABC activity (GO:0009381), Biological Process: SOS response (GO:0009432))
Displaying items 1-30 of 40 in total

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