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gwf2_scaffold_1414

Alias: PER_GWF2_33_10_8

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Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_1414_1
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

285..1226
DNA (942bp) protein (314aa)
id=5094333 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_1414_2
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

1829..2056
DNA (228bp) protein (76aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=52 to=74)
gwf2_scaffold_1414_3
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

2067..2333
DNA (267bp) protein (89aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=60 to=84 evalue=NA)
seg (db=Seg db_id=seg from=36 to=50)
gwf2_scaffold_1414_4
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

2333..2608
DNA (276bp) protein (92aa)
UPF0251 protein Tthe_2016 n=2 Tax=Thermoanaerobacterium thermosaccharolyticum RepID=D9TN98_THETC
Uncharacterized protein {ECO:0000313|EMBL:KKP39299.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
hypothetical protein
(db=HMMPfam db_id=PF02001 from=3 to=90 evalue=2.6e-17 interpro_id=IPR002852 interpro_description=Uncharacterised protein family UPF0251)
gwf2_scaffold_1414_5
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

2650..3714
DNA (1065bp) protein (355aa)
Cytochrome c biogenesis protein transmembrane region n=1 Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RJ29_METP4
cytochrome c biogenesis transmembrane protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Cytochrome c biogenesis protein
seg (db=Seg db_id=seg from=2 to=10)
gwf2_scaffold_1414_6
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

3719..4849
DNA (1131bp) protein (377aa)
Membrane protein, YbiE/YbiF family n=9 Tax=Clostridium perfringens RepID=Q0TQN0_CLOP1
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
seg (db=Seg db_id=seg from=12 to=41)
gwf2_scaffold_1414_7
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

4858..5676
DNA (819bp) protein (273aa)
Zinc transporter ZupT n=1 Tax=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) RepID=C6BZJ6_DESAD rbh
zinc transporter ZupT; K07238 zinc transporter, ZIP family Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
zinc transporter ZupT
seg (db=Seg db_id=seg from=152 to=167)
gwf2_scaffold_1414_8
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

6256..7683
DNA (1428bp) protein (476aa)
cystathionine gamma-synthase (EC:4.4.1.11); K01761 methionine-gamma-lyase [EC:4.4.1.11] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
cystathionine gamma-synthase (EC:4.4.1.11)
Cystathionine gamma-synthase n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A179_NATTJ
seg (db=Seg db_id=seg from=457 to=468)
gwf2_scaffold_1414_9
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(7680..8198)
DNA (519bp) protein (173aa)
id=5094341 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_1414_10
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

8318..9025
DNA (708bp) protein (236aa)
DNA alkylation repair enzyme superfamily n=2 Tax=Thermosipho africanus RepID=B7IDW3_THEAB
DNA alkylation repair enzyme superfamily Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
DNA alkylation repair enzyme
ARM repeat (db=superfamily db_id=SSF48371 from=8 to=222 evalue=1.7e-42 interpro_id=IPR016024 interpro_description=Armadillo-type fold GO=Molecular Function: binding (GO:0005488))
gwf2_scaffold_1414_11
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(9338..9589)
DNA (252bp) protein (84aa)
UPF0102 protein ALO_13977 n=1 Tax=Acetonema longum DSM 6540 RepID=F7NL23_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KKP39306.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
hypothetical protein
(db=HMMPfam db_id=PF02021 from=5 to=66 evalue=3.4e-12 interpro_id=IPR003509 interpro_description=Uncharacterised protein family UPF0102)
gwf2_scaffold_1414_12
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

9746..11119
DNA (1374bp) protein (458aa)
primary replicative DNA helicase (EC:3.6.1.-); K02314 replicative DNA helicase [EC:3.6.4.12] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
primary replicative DNA helicase (EC:3.6.1.-)
Primary replicative DNA helicase n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QUK5_ACEAZ rbh
seg (db=Seg db_id=seg from=22 to=32)
gwf2_scaffold_1414_13
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(11443..12549)
DNA (1107bp) protein (369aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=344 to=355)
gwf2_scaffold_1414_14
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(12513..12623)
DNA (111bp) protein (37aa)
id=5094346 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_1414_15
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

12731..14641
DNA (1911bp) protein (637aa)
lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Lysine--tRNA ligase n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KMI1_CLOPH rbh
hypothetical protein
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=1 to=132 evalue=1.2e-34 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
gwf2_scaffold_1414_16
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(14851..15747)
DNA (897bp) protein (299aa)
Putative permease, DMT superfamily n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7T9A9_9EURY
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
seg (db=Seg db_id=seg from=75 to=81)
gwf2_scaffold_1414_17
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

15758..15895
DNA (138bp) protein (46aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
gwf2_scaffold_1414_18
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

16061..17296
DNA (1236bp) protein (412aa)
Transcription termination factor NusA n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S3L9_THEOJ rbh
Transcription termination factor NusA, N utilization substance protein A {ECO:0000313|EMBL:KKP39313.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011
NusA antitermination factor
coiled-coil (db=Coil db_id=coil from=325 to=346 evalue=NA)
gwf2_scaffold_1414_19
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

17352..18581
DNA (1230bp) protein (410aa)
General secretory pathway protein E n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQ24_9FIRM
Type II secretion system protein E, type IV pilus assembly protein PilB {ECO:0000313|EMBL:KKP39314.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_
type II secretion system protein E
T2SP_E (db=PatternScan db_id=PS00662 from=371 to=385 evalue=0.0 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
gwf2_scaffold_1414_20
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

18602..19021
DNA (420bp) protein (140aa)
Type II secretion system protein E n=1 Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U5N1_OCEP5
type II secretion system protein E Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=136 evalue=1.7e-19)
gwf2_scaffold_1414_21
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

19032..21962
DNA (2931bp) protein (977aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=636 to=671 evalue=NA)
seg (db=Seg db_id=seg from=681 to=693)
gwf2_scaffold_1414_22
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

22005..22760
DNA (756bp) protein (252aa)
id=5094354 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_1414_23
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(22755..23495)
DNA (741bp) protein (247aa)
"Winged helix" DNA-binding domain Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Transcriptional regulator, TrmB
coiled-coil (db=Coil db_id=coil from=83 to=107 evalue=NA)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=101 evalue=4.6e-07)
gwf2_scaffold_1414_24
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

23670..25142
DNA (1473bp) protein (491aa)
Na+/proline symporter n=1 Tax=Xenococcus sp. PCC 7305 RepID=L8M1M6_9CYAN rbh
putP; Na+/proline symporter PutP Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
putP; Na+/proline symporter PutP
seg (db=Seg db_id=seg from=2 to=26)
gwf2_scaffold_1414_25
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

25139..25576
DNA (438bp) protein (146aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=19 to=36)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=41)
gwf2_scaffold_1414_26
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(25580..26800)
DNA (1221bp) protein (407aa)
AAA ATPase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XPK3_9BACT
putative ATPase (AAA+ superfamily) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
putative ATPase (AAA+ superfamily)
seg (db=Seg db_id=seg from=12 to=23)
gwf2_scaffold_1414_27
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

27082..28161
DNA (1080bp) protein (360aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=172 to=185)
gwf2_scaffold_1414_28
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

28290..30011
DNA (1722bp) protein (574aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=447 to=461)
gwf2_scaffold_1414_29
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

30216..30773
DNA (558bp) protein (186aa)
hypothetical protein; K01975 2'-5' RNA ligase [EC:6.5.1.-] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
2'-5' RNA ligase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYL9_METFV
hypothetical protein
seg (db=Seg db_id=seg from=99 to=114)
gwf2_scaffold_1414_30
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

30755..31357
DNA (603bp) protein (201aa)
Thiol-disulfide isomerase or thioredoxin n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6ZNT6_MELRP
Thioredoxin-like protein {ECO:0000313|EMBL:KKP39325.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
thiol-disulfide isomerase or thioredoxin
no description (db=Gene3D db_id=G3DSA:3.40.30.10 from=23 to=149 evalue=1.7e-14 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
Displaying items 1-30 of 54 in total

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