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gwf2_scaffold_2398

Alias: PER_GWF2_33_10_19

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_2398_1
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(131..1534)
DNA (1404bp) protein (468aa)
Bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase, indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase {ECO:0000313|EMBL:KKP38246.1}; EC=4.
indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase (EC:4.1.1.48)
Putative uncharacterized protein n=1 Tax=Megamonas funiformis YIT 11815 RepID=H3K975_9FIRM rbh
IGPS (db=PatternScan db_id=PS00614 from=55 to=73 evalue=0.0 interpro_id=IPR001468 interpro_description=Indole-3-glycerol phosphate synthase, conserved site GO=Molecular Function: indole-3-glycerol-phosphate synthase activity (GO:0004425), Biological Process: tryptophan metabolic process (GO:0006568))
gwf2_scaffold_2398_2
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(1531..2373)
DNA (843bp) protein (281aa)
Tryptophan synthase subunit slpha, tryptophan synthase alpha chain {ECO:0000313|EMBL:KKP38247.1}; EC=4.2.1.20 {ECO:0000313|EMBL:KKP38247.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" sour
trpA; tryptophan synthase subunit alpha TrpA (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NCM4_DESTT
TRP_SYNTHASE_ALPHA (db=PatternScan db_id=PS00167 from=68 to=81 evalue=0.0 interpro_id=IPR018204 interpro_description=Tryptophan synthase, alpha chain, active site GO=Molecular Function: tryptophan synthase activity (GO:0004834))
gwf2_scaffold_2398_3
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(2327..3526)
DNA (1200bp) protein (400aa)
Tryptophan synthase beta chain n=1 Tax=Frankia sp. CN3 RepID=G6H8F2_9ACTO rbh
Tryptophan synthase subunit beta {ECO:0000313|EMBL:KKP38248.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
trpB1; tryptophan synthase subunit beta
TRP_SYNTHASE_BETA (db=PatternScan db_id=PS00168 from=83 to=97 evalue=0.0 interpro_id=IPR006653 interpro_description=Tryptophan synthase, beta chain, conserved site GO=Molecular Function: tryptophan synthase activity (GO:0004834), Biological Process: tryptophan metabolic process (GO:0006568))
gwf2_scaffold_2398_4
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(3616..4224)
DNA (609bp) protein (203aa)
azoreductase (EC:1.6.99.-)
Putative NAD(P)H dehydrogenase n=1 Tax=uncultured bacterium RepID=Q20JY4_9BACT
NAD(P)H dehydrogenase (Quinone) {ECO:0000313|EMBL:KKP38249.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
Flavoproteins (db=superfamily db_id=SSF52218 from=1 to=198 evalue=4.1e-49)
gwf2_scaffold_2398_5
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(4261..5007)
DNA (747bp) protein (249aa)
Para-aminobenzoate/anthranilate synthase glutamine amidotransferasecomponent II (EC:4.1.3.27); K01658 anthranilate synthase component II [EC:4.1.3.27] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Para-aminobenzoate/anthranilate synthase glutamine amidotransferasecomponent II (EC:4.1.3.27)
Para-aminobenzoate/anthranilate synthase glutamine amidotransferasecomponent II n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q096N7_STIAD
seg (db=Seg db_id=seg from=105 to=116)
gwf2_scaffold_2398_6
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(4986..6473)
DNA (1488bp) protein (496aa)
anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
anthranilate synthase subunit I (EC:4.1.3.27)
Anthranilate synthase component I n=2 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M1I1_CLOCD rbh
ADC synthase (db=superfamily db_id=SSF56322 from=16 to=494 evalue=1.1e-140 interpro_id=IPR005801 interpro_description=ADC synthase GO=Biological Process: biosynthetic process (GO:0009058))
gwf2_scaffold_2398_7
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(6485..6784)
DNA (300bp) protein (100aa)
Trp-operon repressor n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VM40_CLOSH
Trp-operon repressor Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
TrpR like protein, YerC/YecD
no description (db=Gene3D db_id=G3DSA:1.10.1270.10 from=4 to=94 evalue=1.3e-11 interpro_id=IPR000831 interpro_description=Trp repressor GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
gwf2_scaffold_2398_8
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(6863..7357)
DNA (495bp) protein (165aa)
Single-stranded DNA-binding protein 1 n=1 Tax=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) RepID=SSB1_CHLTE
ssb-1; single-strand binding protein; K03111 single-strand DNA-binding protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
ssb-1; single-strand binding protein
ssb: single-strand binding protein (db=HMMTigr db_id=TIGR00621 from=6 to=164 evalue=1.1e-44 interpro_id=IPR011344 interpro_description=Single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697), Biological Process: DNA replication (GO:0006260))
gwf2_scaffold_2398_9
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(7460..7735)
DNA (276bp) protein (92aa)
transmembrane_regions Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwf2_scaffold_2398_10
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

7774..9012
DNA (1239bp) protein (413aa)
predicted DNA methylase n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI000174294B
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
coiled-coil (db=Coil db_id=coil from=28 to=49 evalue=NA)
gwf2_scaffold_2398_11
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

9143..10060
DNA (918bp) protein (306aa)
RluA family pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Ribosomal large subunit pseudouridine synthase D n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CRJ4_9CLOT
RluA family pseudouridine synthase
PSI_RLU (db=PatternScan db_id=PS01129 from=123 to=137 evalue=0.0 interpro_id=IPR006224 interpro_description=Pseudouridine synthase, RluC/RluD, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
gwf2_scaffold_2398_12
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists


comp(10078..10578)
DNA (501bp) protein (167aa)
50S ribosomal protein L21 n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GYY9_9FIRM
rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
rplU; 50S ribosomal protein L21
coiled-coil (db=Coil db_id=coil from=135 to=156 evalue=NA)
gwf2_scaffold_2398_13
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(10614..11195)
DNA (582bp) protein (194aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29) Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F4P2_DESDL
PEPT_TRNA_HYDROL_1 (db=PatternScan db_id=PS01195 from=14 to=27 evalue=0.0 interpro_id=IPR018171 interpro_description=Peptidyl-tRNA hydrolase, conserved site GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045))
gwf2_scaffold_2398_14
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(11233..12780)
DNA (1548bp) protein (516aa)
GTPase obg n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SR53_9BACT rbh
Obg family GTPase CgtA; K03979 GTP-binding protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
Obg family GTPase CgtA
GTP1_OBG (db=PatternScan db_id=PS00905 from=217 to=230 evalue=0.0 interpro_id=IPR006074 interpro_description=GTP1/OBG, conserved site GO=Molecular Function: GTP binding (GO:0005525))
gwf2_scaffold_2398_15
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(12869..14305)
DNA (1437bp) protein (479aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38260.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
coiled-coil (db=Coil db_id=coil from=29 to=50 evalue=NA)
seg (db=Seg db_id=seg from=138 to=150)
gwf2_scaffold_2398_16
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(14310..14636)
DNA (327bp) protein (109aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=75 to=96 evalue=NA)
gwf2_scaffold_2398_17
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(14717..14959)
DNA (243bp) protein (81aa)
id=5094747 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2398_18
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(14972..15634)
DNA (663bp) protein (221aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP38263.1}; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
coiled-coil (db=Coil db_id=coil from=66 to=94 evalue=NA)
seg (db=Seg db_id=seg from=20 to=32)
gwf2_scaffold_2398_19
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(15670..16296)
DNA (627bp) protein (209aa)
id=5094749 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2398_20
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(16310..16738)
DNA (429bp) protein (143aa)
coiled-coil Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
coiled-coil (db=Coil db_id=coil from=92 to=127 evalue=NA)
gwf2_scaffold_2398_21
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(16879..17067)
DNA (189bp) protein (63aa)
id=5094751 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2398_22
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

17195..17701
DNA (507bp) protein (169aa)
Putative lipoprotein n=1 Tax=Desulfosporosinus sp. OT RepID=G2G286_9FIRM
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
seg (db=Seg db_id=seg from=4 to=16)
gwf2_scaffold_2398_23
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

17852..18232
DNA (381bp) protein (127aa)
id=5094753 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
gwf2_scaffold_2398_24
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

18366..19280
DNA (915bp) protein (305aa)
seg Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
seg (db=Seg db_id=seg from=4 to=17)
gwf2_scaffold_2398_25
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

19438..19872
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Ilumatobacter coccineum YM16-304 RepID=M4ZV80_9ACTN
hypothetical protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwf2_scaffold_2398_26
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(19879..21000)
DNA (1122bp) protein (374aa)
Putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DKA8_9BACT rbh
mnmA; tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
seg (db=Seg db_id=seg from=196 to=209)
gwf2_scaffold_2398_27
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

21072..21476
DNA (405bp) protein (135aa)
GCN5-related N-acetyltransferase n=3 Tax=Alteromonas macleodii RepID=K0CQU7_ALTME
N-acetyltransferase GCN5 Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
N-acetyltransferase GCN5
(db=HMMPfam db_id=PF00583 from=51 to=124 evalue=1.4e-11 interpro_id=IPR000182 interpro_description=GCN5-related N-acetyltransferase (GNAT) domain GO=Molecular Function: N-acetyltransferase activity (GO:0008080))
gwf2_scaffold_2398_28
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(21471..22343)
DNA (873bp) protein (291aa)
Alpha-L-glutamate ligase, RimK family n=1 Tax=Vulcanisaeta moutnovskia (strain 768-28) RepID=F0QTM6_VULM7
alpha-L-glutamate ligase Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
alpha-L-glutamate ligase
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=92 to=290 evalue=1.1e-23)
gwf2_scaffold_2398_29
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(22340..23242)
DNA (903bp) protein (301aa)
Alpha-L-glutamate ligase, RimK family n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3S0R0_FERPA
alpha-L-glutamate ligase, RimK family; K05844 ribosomal protein S6 modification protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
alpha-L-glutamate ligase, RimK family
rimK_fam: alpha-L-glutamate ligases, RimK fa (db=HMMTigr db_id=TIGR00768 from=2 to=289 evalue=1.5e-51 interpro_id=IPR004666 interpro_description=Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO=Biological Process: protein modification process (GO:0006464))
gwf2_scaffold_2398_30
RIFOXYA2_FULL_Peregrinibacteria_33_21_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(23251..24099)
DNA (849bp) protein (283aa)
Ribosomal protein S6 modification protein n=61 Tax=Enterobacteriaceae RepID=RIMK_KLEP3
rimK; ribosomal protein S6 modification protein; K05844 ribosomal protein S6 modification protein Tax=RIFOXYA2_FULL_Peregrinibacteria_33_21_curated
ribosomal protein S6 modification protein
RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN (db=HMMPanther db_id=PTHR21621 from=121 to=276 evalue=2.6e-08)
Displaying items 1-30 of 35 in total

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