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JSantini_S4_scaffold_28

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Displaying items 1-30 of 55 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
JSantini_S4_scaffold_28_1
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..96)
DNA (96bp) protein (32aa)
hypothetical protein
hypothetical protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002624FC4
Uncharacterized protein {ECO:0000313|EMBL:ACV35866.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
JSantini_S4_scaffold_28_2
Desulfatibacillum alkenivorans, Desulfatibacillum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(218..550)
DNA (333bp) protein (111aa)
small multidrug resistance protein
Small multidrug resistance protein n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FJS7_DESAA
Small multidrug resistance protein {ECO:0000313|EMBL:ACL02355.1}; TaxID=439235 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum.;" source="Desulfatibacillum alkenivorans (strain AK-01).;"
JSantini_S4_scaffold_28_3
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

956..1867
DNA (912bp) protein (304aa)
integron integrase
Integron integrase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJI9_THIDA
Integrase/recombinase {ECO:0000313|EMBL:CDQ09425.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_S4_scaffold_28_4
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1889..2269)
DNA (381bp) protein (127aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EMX6_ACIF5
Uncharacterized protein {ECO:0000313|EMBL:ACH82906.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_S4_scaffold_28_5
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2334..2855)
DNA (522bp) protein (174aa)
Inorganic pyrophosphatase
Inorganic pyrophosphatase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JN05_9GAMM
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_28_6
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2877..3638)
DNA (762bp) protein (254aa)
3-deoxy-manno-octulosonate cytidylyltransferase
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JN04_9GAMM
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_S4_scaffold_28_7
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3635..3817)
DNA (183bp) protein (61aa)
hypothetical protein
UPF0434 protein Lferr_0650 n=3 Tax=Acidithiobacillus RepID=B5EMX3_ACIF5
UPF0434 protein Lferr_0650 {ECO:0000256|HAMAP-Rule:MF_01187}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_S4_scaffold_28_8
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3817..4815)
DNA (999bp) protein (333aa)
tetraacyldisaccharide 4'-kinase
Tetraacyldisaccharide 4'-kinase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JN02_9GAMM
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_28_9
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4812..5957)
DNA (1146bp) protein (382aa)
hypothetical protein
Uncharacterized protein n=3 Tax=root RepID=E6QDE1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:ACH82901.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_S4_scaffold_28_10
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5954..6640)
DNA (687bp) protein (229aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrooxidans (strain ATCC 53993) RepID=B5EMX0_ACIF5
Uncharacterized protein {ECO:0000313|EMBL:ACH82900.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_S4_scaffold_28_11
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6644..7048)
DNA (405bp) protein (135aa)
biopolymer transport protein ExbD/TolR
Biopolymer transport protein ExbD/TolR n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JMZ9_9GAMM
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:AEM47104.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_28_12
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7045..7665)
DNA (621bp) protein (207aa)
MotA/TolQ/ExbB proton channel
MotA/TolQ/ExbB proton channel n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JMZ8_9GAMM
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:AEM47103.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_28_13
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7759..9969)
DNA (2211bp) protein (737aa)
DNA internalization-related competence protein ComEC/Rec2
DNA internalization-related competence protein ComEC/Rec2 n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7J4M7_ACIF2
DNA internalization-related competence protein ComEC/Rec2 {ECO:0000313|EMBL:ACK80062.1}; TaxID=243159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP; 104768 / NCIMB 8455) (Ferrobacillus ferrooxidans (strain ATCC 23270)).;"
JSantini_S4_scaffold_28_14
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10014..10514
DNA (501bp) protein (167aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JMZ6_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:AEM47101.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_28_15
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10511..11206)
DNA (696bp) protein (232aa)
ABC transporter
ABC transporter related protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JMZ5_9GAMM
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_28_16
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11199..12443)
DNA (1245bp) protein (415aa)
lipoprotein releasing system, transmembrane protein, LolC/E family
Lipoprotein releasing system, transmembrane protein, LolC/E family n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JMZ4_9GAMM
Lipoprotein-releasing system transmembrane protein LolC {ECO:0000313|EMBL:CDQ09439.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_S4_scaffold_28_17
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12440..13930)
DNA (1491bp) protein (497aa)
Lysyl-tRNA synthetase
Lysine--tRNA ligase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JMZ3_9GAMM
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_S4_scaffold_28_18
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13967..14857)
DNA (891bp) protein (297aa)
peptide chain release factor 2
Peptide chain release factor 2 n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JMZ2_9GAMM
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_S4_scaffold_28_19
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15212..15397)
DNA (186bp) protein (62aa)
plasmid stabilization system
Plasmid stabilization system n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JPD1_9GAMM
Plasmid stabilization system {ECO:0000313|EMBL:AEM47362.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_28_20
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15384..15680)
DNA (297bp) protein (99aa)
RelB/DinJ family addiction module antitoxin
Addiction module antitoxin, RelB/DinJ family n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JPD0_9GAMM
Addiction module antitoxin, RelB/DinJ family {ECO:0000313|EMBL:AEM47361.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_28_21
unknown

Not on your lists

16363..16578
DNA (216bp) protein (72aa)

This feature has no annotations

JSantini_S4_scaffold_28_22
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17864..18160)
DNA (297bp) protein (99aa)
hypothetical protein
hypothetical protein n=1 Tax=Methyloversatilis sp. NVD RepID=UPI0003727ACD
Uncharacterized protein {ECO:0000313|EMBL:CDQ11685.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_S4_scaffold_28_23
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18254..20032)
DNA (1779bp) protein (593aa)
recJ; single-stranded-DNA-specific exonuclease RecJ (EC:3.1.-.-)
Phosphoesterase RecJ domain protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EMW0_ACIF5
Phosphoesterase RecJ domain protein {ECO:0000313|EMBL:ACH82890.1}; TaxID=380394 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrooxidans (strain ATCC 53993) (Leptospirillum; ferrooxidans (ATCC 53993)).;"
JSantini_S4_scaffold_28_24
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20033..20998)
DNA (966bp) protein (322aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JMM0_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:AEM47049.1}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_28_25

Not on your lists

comp(20998..22128)
DNA (1131bp) protein (377aa)
threonine synthase
Threonine synthase,pyridoxal-5'-phosphate-dependent enzyme n=1 Tax=mine drainage metagenome RepID=E6QD86_9ZZZZ
Threonine synthase,pyridoxal-5'-phosphate-dependent enzyme {ECO:0000313|EMBL:CBI05162.1}; EC=4.2.3.1 {ECO:0000313|EMBL:CBI05162.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
JSantini_S4_scaffold_28_26
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22175..23497)
DNA (1323bp) protein (441aa)
homoserine dehydrogenase
Homoserine dehydrogenase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JML8_9GAMM
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_S4_scaffold_28_27
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23497..24678)
DNA (1182bp) protein (394aa)
class I and II aminotransferase
Aminotransferase class I and II n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JML7_9GAMM
Putative aminotransferase, PLP-dependent {ECO:0000313|EMBL:CDQ09448.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_S4_scaffold_28_28
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24774..25148
DNA (375bp) protein (125aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JML6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDQ09449.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
JSantini_S4_scaffold_28_29
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25160..26101)
DNA (942bp) protein (314aa)
RpoD subfamily RNA polymerase sigma-70 subunit
RNA polymerase sigma factor RpoS n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JML5_9GAMM
RNA polymerase sigma factor RpoS {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma S {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma-38 {ECO:0000256|HAMAP-Rule:MF_00959}; TaxID=743299 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
JSantini_S4_scaffold_28_30
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26098..26733)
DNA (636bp) protein (212aa)
protein-L-isoaspartate O-methyltransferase
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JML4_9GAMM
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein L-isoaspartyl methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; Protein-beta-aspartate methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
Displaying items 1-30 of 55 in total

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