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L1_007_000M1_scaffold_1184

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1184_1
unknown

Not on your lists

2..136
DNA (135bp) protein (45aa)

This feature has no annotations

L1_007_000M1_scaffold_1184_2
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

278..1552
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:37 RepID=R7JTQ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE67334.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
hypothetical protein
L1_007_000M1_scaffold_1184_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1725..1967)
DNA (243bp) protein (81aa)
Transcriptional regulator AbrB family n=1 Tax=Clostridium sp. CAG:780 RepID=R5PW59_9CLOT
AbrB family transcriptional regulator {ECO:0000313|EMBL:KHD14373.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
transcriptional regulator, AbrB family
L1_007_000M1_scaffold_1184_4
unknown

Not on your lists

2133..2468
DNA (336bp) protein (112aa)

This feature has no annotations

L1_007_000M1_scaffold_1184_5
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2525..2842)
DNA (318bp) protein (106aa)
AbrB family transcriptional regulator n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G422_CLOPA
Looped-hinge helix DNA binding domain {ECO:0000313|EMBL:CEQ02649.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
looped-hinge helix DNA binding domain, AbrB family
L1_007_000M1_scaffold_1184_6
Firmicutes bacterium CAG:822, Firmicutes, Bacteria

Not on your lists

2891..3103
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:822 RepID=R5IYF5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY47065.1}; TaxID=1263032 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:822.;"
L1_007_000M1_scaffold_1184_7
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4065..4982)
DNA (918bp) protein (306aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:169 RepID=R6BLE9_9CLOT
hypothetical protein
L1_007_000M1_scaffold_1184_8
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4969..5841)
DNA (873bp) protein (291aa)
ThiF family protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MAA0_9FIRM
ThiF family protein {ECO:0000313|EMBL:EDR98941.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
UBA/THIF-type NAD/FAD binding protein
L1_007_000M1_scaffold_1184_9
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5841..7406)
DNA (1566bp) protein (522aa)
MATE efflux family protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KSM1_CLOPH
MATE efflux family protein
MATE efflux family protein {ECO:0000313|EMBL:ABX43673.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L1_007_000M1_scaffold_1184_10
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7430..8614)
DNA (1185bp) protein (395aa)
coproporphyrinogen dehydrogenase (EC:1.3.99.22)
Coproporphyrinogen dehydrogenase {ECO:0000313|EMBL:ABN52573.1}; EC=1.3.99.22 {ECO:0000313|EMBL:ABN52573.1};; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
coproporphyrinogen III oxidase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2C6CD
L1_007_000M1_scaffold_1184_11
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8630..9253)
DNA (624bp) protein (208aa)
beta-lactamase n=1 Tax=Lachnospiraceae bacterium NK4A179 RepID=UPI0003B71CCF
beta-lactamase domain-containing protein
Beta-lactamase domain-containing protein {ECO:0000313|EMBL:AFS78740.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
L1_007_000M1_scaffold_1184_12
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9277..11466)
DNA (2190bp) protein (730aa)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5)
(P)ppGpp synthetase I, SpoT/RelA n=4 Tax=Clostridium thermocellum RepID=E6UMK5_CLOTL
(P)ppGpp synthetase, RelA/SpoT family {ECO:0000313|EMBL:AEV69337.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L1_007_000M1_scaffold_1184_13
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11585..13300)
DNA (1716bp) protein (572aa)
exonuclease RecJ (EC:3.1.-.-)
Exonuclease RecJ {ECO:0000313|EMBL:AEV69339.1}; EC=3.1.-.- {ECO:0000313|EMBL:AEV69339.1};; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Exonuclease RecJ n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M330_CLOCD
L1_007_000M1_scaffold_1184_14
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13463..15832)
DNA (2370bp) protein (790aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
DNA mismatch repair protein MutS n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2D456
MutS2 family protein
L1_007_000M1_scaffold_1184_15
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16471..17898
DNA (1428bp) protein (476aa)
gltB1; ferredoxin-dependent glutamate synthase GltB (EC:1.4.7.1)
Ferredoxin-dependent glutamate synthase GltB {ECO:0000313|EMBL:AFS77613.1}; EC=1.4.7.1 {ECO:0000313|EMBL:AFS77613.1};; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
Ferredoxin-dependent glutamate synthase GltB n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AUQ8_CLOA9
L1_007_000M1_scaffold_1184_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18517..18828)
DNA (312bp) protein (104aa)
DNA-binding helix-turn-helix protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQA9_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFB75116.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
XRE family transcriptional regulator
L1_007_000M1_scaffold_1184_17
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18867..19142)
DNA (276bp) protein (92aa)
DNA-binding protein n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B4AFAA
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERK62713.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
XRE family transcriptional regulator
L1_007_000M1_scaffold_1184_18
Clostridium sp. CAG:470, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19378..19734)
DNA (357bp) protein (119aa)
Helix-turn-helix family protein n=1 Tax=Clostridium sp. CAG:470 RepID=R7FH68_9CLOT
Helix-turn-helix family protein {ECO:0000313|EMBL:CDE13828.1}; TaxID=1262812 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:470.;"
XRE family transcriptional regulator
L1_007_000M1_scaffold_1184_19
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19731..20054)
DNA (324bp) protein (108aa)
Uncharacterized protein n=3 Tax=Clostridium clostridioforme RepID=N9YDB9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ65571.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
HTH-type transcriptional regulator type 3
L1_007_000M1_scaffold_1184_20
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20379..20714)
DNA (336bp) protein (112aa)
Uncharacterized protein n=8 Tax=Clostridium RepID=A8RMN7_9CLOT
Regulatory protein {ECO:0000313|EMBL:ENZ10467.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
XRE family transcriptional regulator
L1_007_000M1_scaffold_1184_21
Clostridium sp. CAG:470, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20856..21197)
DNA (342bp) protein (114aa)
Helix-turn-helix family protein n=1 Tax=Clostridium sp. CAG:470 RepID=R7FH68_9CLOT
Helix-turn-helix family protein {ECO:0000313|EMBL:CDE13828.1}; TaxID=1262812 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:470.;"
toxin-antitoxin system
L1_007_000M1_scaffold_1184_22
Desulfitobacterium dehalogenans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21383..21742)
DNA (360bp) protein (120aa)
Putative transcriptional regulator n=1 Tax=Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1) RepID=I4A4R2_DESDJ
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AFL98946.1}; TaxID=756499 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 /; JW/IU-DC1).;"
L1_007_000M1_scaffold_1184_23
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21942..23075
DNA (1134bp) protein (378aa)
Metallo-beta-lactamase domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NPV2_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EDN01877.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L1_007_000M1_scaffold_1184_24
unknown

Not on your lists

23098..23490
DNA (393bp) protein (131aa)

This feature has no annotations

L1_007_000M1_scaffold_1184_25
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24731..25267
DNA (537bp) protein (179aa)
Transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7A039_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CDD54143.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
Transcriptional regulators
L1_007_000M1_scaffold_1184_26
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25264..26994
DNA (1731bp) protein (577aa)
ABC transporter related protein n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7AF45_9FIRM
ABC transporter related protein {ECO:0000313|EMBL:CDD54144.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
ABC transporter
L1_007_000M1_scaffold_1184_27
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26996..28912
DNA (1917bp) protein (639aa)
ABC transporter n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2F576
Uncharacterized protein {ECO:0000313|EMBL:EEH97742.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
ABC-type multidrug transport system, ATPase and permease components
L1_007_000M1_scaffold_1184_28
Paenibacillus sp. TCA20, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29317..30123)
DNA (807bp) protein (269aa)
Putative transcriptional regulator YfiF n=1 Tax=Paenibacillus mucilaginosus (strain KNP414) RepID=F8F6L0_PAEMK
Transcriptional regulator {ECO:0000313|EMBL:GAK42757.1}; TaxID=1499968 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. TCA20.;"
transcriptional regulator YfiF
L1_007_000M1_scaffold_1184_29
Bacteroides cellulosilyticus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30284..34387
DNA (4104bp) protein (1368aa)
hypothetical protein n=1 Tax=Paenibacillus massiliensis RepID=UPI000365DE0E
Carbohydrate binding module (Family 6) {ECO:0000313|EMBL:EEF89044.1}; TaxID=537012 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides cellulosilyticus DSM 14838.;"
cbm32B; putative carbohydrate-binding protein
L1_007_000M1_scaffold_1184_30
Lachnospiraceae bacterium JC7, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34479..34775)
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI000366CC52
Uncharacterized protein {ECO:0000313|EMBL:ETP72662.1}; TaxID=1165092 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium JC7.;"
hypothetical protein
Displaying items 1-30 of 33 in total

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