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L1_007_000M1_scaffold_1409

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_1409_1
RIFOXYB2_FULL_RIF07_49_35_curated, RIF7, Bacteria

Not on your lists

3..284
DNA (282bp) protein (94aa)
anthranilate synthase component I (EC:4.1.3.27)
anthranilate synthase subunit I n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2D178
Tax=RIFOXYB2_FULL_RIF07_49_35_curated
L1_007_000M1_scaffold_1409_2
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

284..856
DNA (573bp) protein (191aa)
anthranilate synthase, component II (EC:4.1.3.27)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MHZ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB95624.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
L1_007_000M1_scaffold_1409_3
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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911..1930
DNA (1020bp) protein (340aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Anthranilate phosphoribosyltransferase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M1H9_CLOCD
anthranilate phosphoribosyltransferase
L1_007_000M1_scaffold_1409_4
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1944..2738
DNA (795bp) protein (265aa)
Indole-3-glycerol phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase {ECO:0000256|SAAS:SAAS00046689}; EC=4.1.1.48 {ECO:0000256|SAAS:SAAS00046705};; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Indole-3-glycerol phosphate synthase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M1H8_CLOCD
L1_007_000M1_scaffold_1409_5
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2757..3398
DNA (642bp) protein (214aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
phosphoribosylanthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EA59_9CLOT
L1_007_000M1_scaffold_1409_6
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3450..4646
DNA (1197bp) protein (399aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VSE6_9FIRM
L1_007_000M1_scaffold_1409_7
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4639..5445
DNA (807bp) protein (269aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EA61_9CLOT
L1_007_000M1_scaffold_1409_8
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(5638..5982)
DNA (345bp) protein (115aa)
aspartate 1-decarboxylase (EC:4.1.1.11)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
aspartate decarboxylase n=1 Tax=Niabella aurantiaca RepID=UPI000362553C
L1_007_000M1_scaffold_1409_9
Prevotella sp. CAG:1092, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(6007..6891)
DNA (885bp) protein (295aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247611};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247610}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1262919 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:1092.;"
Pantothenate synthetase n=1 Tax=Prevotella sp. CAG:1092 RepID=R5PMX8_9BACT
pantoate--beta-alanine ligase
L1_007_000M1_scaffold_1409_10
Coprococcus sp. CAG:782, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6904..7710)
DNA (807bp) protein (269aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=1262863 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus sp. CAG:782.;"
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Coprococcus sp. CAG:782 RepID=R5JJK8_9FIRM
L1_007_000M1_scaffold_1409_11
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8246..9859
DNA (1614bp) protein (538aa)
CTP synthase (EC:6.3.4.2)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
CTP synthase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JRW9_CELLD
L1_007_000M1_scaffold_1409_12
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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10063..13161
DNA (3099bp) protein (1033aa)
S-layer domain-containing protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MHP6_9FIRM
S-layer domain-containing protein {ECO:0000313|EMBL:CDB93826.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
S-layer protein
L1_007_000M1_scaffold_1409_13
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14062..15366
DNA (1305bp) protein (435aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
phenylacetate-CoA ligase (EC:6.2.1.30)
Phenylacetate-CoA ligase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MLD3_9FIRM
L1_007_000M1_scaffold_1409_14
Cellvibrio sp. BR, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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15406..16350
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Cellvibrio sp. BR RepID=I3IBU9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIK45534.1}; TaxID=1134474 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio sp. BR.;"
Glycosyltransferases involved in cell wall biogenesis
L1_007_000M1_scaffold_1409_15
Clostridium sp. CAG:230, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16369..18090
DNA (1722bp) protein (574aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:230 RepID=R6DPR3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA86336.1}; TaxID=1262782 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:230.;"
hypothetical protein
L1_007_000M1_scaffold_1409_16
Lactococcus lactis, Lactococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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18118..19545
DNA (1428bp) protein (476aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IUV6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:GAM79435.1}; TaxID=1360 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus.;" source="Lactococcus lactis subsp. lactis (Streptococcus lactis).;"
hypothetical protein
L1_007_000M1_scaffold_1409_17
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19512..20720
DNA (1209bp) protein (403aa)
Putative uncharacterized protein n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SV80_CLOC7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL53054.1}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
L1_007_000M1_scaffold_1409_18
Clostridium sp. CAG:230, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20843..22552
DNA (1710bp) protein (570aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:230 RepID=R6DPR3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA86336.1}; TaxID=1262782 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:230.;"
hypothetical protein
L1_007_000M1_scaffold_1409_19
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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22570..23544
DNA (975bp) protein (325aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EDK25047.1}; EC=2.4.-.- {ECO:0000313|EMBL:EDK25047.1};; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Glycosyltransferase, group 2 family protein n=5 Tax=Clostridiales RepID=A5KKU6_9FIRM
Glycosyltransferases involved in cell wall biogenesis
L1_007_000M1_scaffold_1409_20
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23544..25679
DNA (2136bp) protein (712aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2ASK8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI68819.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
6-pyruvoyl-tetrahydropterin synthase related domain, membrane family protein
L1_007_000M1_scaffold_1409_21
Bacteroides pectinophilus CAG:437, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25676..27748
DNA (2073bp) protein (691aa)
Uncharacterized protein n=2 Tax=Bacteria RepID=R7ANG2_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDD57024.1}; TaxID=1263051 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides pectinophilus CAG:437.;"
CcoN; Cbb3-type cytochrome oxidase subunit 1
L1_007_000M1_scaffold_1409_22
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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27851..28003
DNA (153bp) protein (51aa)
Methyltransferase domain protein n=2 Tax=Erysipelotrichaceae RepID=B0N318_9FIRM
Methyltransferase domain protein {ECO:0000313|EMBL:EDS18840.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
hypothetical protein
L1_007_000M1_scaffold_1409_23
unknown

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28003..28095
DNA (93bp) protein (31aa)

This feature has no annotations

L1_007_000M1_scaffold_1409_24
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28367..29350)
DNA (984bp) protein (328aa)
DNA replication protein DnaC n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1Y1_9FIRM
DNA replication protein DnaC {ECO:0000313|EMBL:EEA84226.1}; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] hiranonis DSM 13275.;"
DNA replication protein DnaC
L1_007_000M1_scaffold_1409_25
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29428..30438)
DNA (1011bp) protein (337aa)
Primosome, DnaD subunit n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZY33_MAHA5
primosome subunit DnaD
Primosome, DnaD subunit {ECO:0000313|EMBL:AEE97729.1}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L1_007_000M1_scaffold_1409_26
Clostridium acetobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30459..31853)
DNA (1395bp) protein (465aa)
tRNA modification GTPase MnmE {ECO:0000255|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000255|HAMAP-Rule:MF_00379};; TaxID=272562 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG; 5710 / VKM B-1787).;"
tRNA modification GTPase MnmE n=3 Tax=Clostridium acetobutylicum RepID=MNME_CLOAB
trmE; tRNA modification GTPase TrmE
L1_007_000M1_scaffold_1409_27
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31860..33182)
DNA (1323bp) protein (441aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Caloramator australicus RC3 RepID=I7K914_9CLOT
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
dnaA; chromosomal replication initiation protein
L1_007_000M1_scaffold_1409_28
Lactobacillus buchneri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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33655..33789
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=2 Tax=Lactobacillus buchneri RepID=F4FWM5_LACBN
rpmH; 50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1071400 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus buchneri CD034.;"
L1_007_000M1_scaffold_1409_29
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

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33886..34293
DNA (408bp) protein (136aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
rnpA; ribonuclease P protein component (EC:3.1.26.5)
ribonuclease P n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B5AE27
L1_007_000M1_scaffold_1409_30
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

34654..35688
DNA (1035bp) protein (345aa)
Inner membrane protein OxaA n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5ATI3_9FIRM
Inner membrane protein OxaA {ECO:0000313|EMBL:CCX45264.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
YidC/Oxa1 family membrane protein insertase
Displaying items 1-30 of 42 in total

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