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L1_007_000M1_scaffold_10

Search features with annotation key words

Displaying items 91-120 of 237 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_10_91
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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104790..105623
DNA (834bp) protein (278aa)
Indole-3-glycerol phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Indole-3-glycerol phosphate synthase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5W0_9FIRM
L1_007_000M1_scaffold_10_92
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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105740..106924
DNA (1185bp) protein (395aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
tryptophan synthase, beta chain (EC:4.2.1.20)
Tryptophan synthase beta chain n=2 Tax=root RepID=R5DVH9_9FIRM
L1_007_000M1_scaffold_10_93
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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106917..107687
DNA (771bp) protein (257aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
tryptophan synthase, alpha chain (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DZ92_9FIRM
L1_007_000M1_scaffold_10_94
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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107684..108409
DNA (726bp) protein (242aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
NAD-dependent protein deacetylase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVP7_9FIRM
silent information regulator protein Sir2
L1_007_000M1_scaffold_10_95
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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108616..108876
DNA (261bp) protein (87aa)
30S ribosomal protein S20 n=2 Tax=Ruminococcus RepID=D4L5W3_9FIRM
SSU ribosomal protein S20P
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_10_96
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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109029..109184
DNA (156bp) protein (52aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5E7X5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15009.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_10_97

Not on your lists

109277..109555
DNA (279bp) protein (93aa)
Uncharacterized protein n=2 Tax=root RepID=K1THD2_9ZZZZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKC66974.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_10_98
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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109558..110589
DNA (1032bp) protein (344aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5W6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15011.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_10_99
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(110631..112112)
DNA (1482bp) protein (494aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
Histidine kinase n=1 Tax=Eubacterium sp. CAG:202 RepID=R6MSL8_9FIRM
histidine kinase
L1_007_000M1_scaffold_10_100
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(112189..112872)
DNA (684bp) protein (228aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=root RepID=D4L5W7_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CCX84233.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_10_101
unknown

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comp(112869..113018)
DNA (150bp) protein (50aa)

This feature has no annotations

L1_007_000M1_scaffold_10_102
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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113346..114197
DNA (852bp) protein (284aa)
fumarase alpha subunit (EC:4.2.1.2)
Fumarase alpha subunit {ECO:0000313|EMBL:CBL15013.1}; EC=4.2.1.2 {ECO:0000313|EMBL:CBL15013.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Fumarase alpha subunit n=2 Tax=Ruminococcus RepID=D4L5W8_9FIRM
L1_007_000M1_scaffold_10_103
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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114210..114761
DNA (552bp) protein (184aa)
fumB; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region (EC:4.2.1.2)
Hydro-lyase Fe-S type tartrate/fumarate subfamily beta subunit n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E7W1_9FIRM
Hydro-lyase Fe-S type tartrate/fumarate subfamily beta subunit {ECO:0000313|EMBL:CCX84226.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_10_104
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(114884..115789)
DNA (906bp) protein (302aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
DNA (Cytosine-5-)-methyltransferase n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SH09_9FIRM
modification methylase
L1_007_000M1_scaffold_10_105
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(115799..116683)
DNA (885bp) protein (295aa)
HindIII restriction endonuclease n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SH10_9FIRM
HindIII restriction endonuclease {ECO:0000313|EMBL:EFP63181.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
hindIII restriction endonuclease
L1_007_000M1_scaffold_10_106
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(116870..117106)
DNA (237bp) protein (79aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5DVF1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15015.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_10_107
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(117159..117560)
DNA (402bp) protein (134aa)
Putative hydrolase NUDIX family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVM8_9FIRM
Putative hydrolase NUDIX family {ECO:0000313|EMBL:CCX84218.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
NUDIX hydrolase
L1_007_000M1_scaffold_10_108
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(117572..118228)
DNA (657bp) protein (219aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
LexA repressor n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E607_9FIRM
L1_007_000M1_scaffold_10_109
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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118704..119306
DNA (603bp) protein (201aa)
Protein involved in cell division n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVE5_9FIRM
Protein involved in cell division {ECO:0000313|EMBL:CCX84215.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Protein involved in cell division
L1_007_000M1_scaffold_10_110
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(119552..119827)
DNA (276bp) protein (92aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5X3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15018.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_10_111
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

119968..121071
DNA (1104bp) protein (368aa)
Heat-inducible transcription repressor hrcA n=2 Tax=root RepID=D4L5X4_9FIRM
heat shock gene repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_10_112
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

121101..121658
DNA (558bp) protein (186aa)
Protein GrpE n=2 Tax=Ruminococcus RepID=D4L5X5_9FIRM
Molecular chaperone GrpE (heat shock protein)
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_10_113
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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121730..123586
DNA (1857bp) protein (619aa)
Chaperone protein DnaK n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5X6_9FIRM
chaperone protein DnaK
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332, ECO:0000313|EMBL:CBL15021.1}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_10_114
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

123709..124851
DNA (1143bp) protein (381aa)
Chaperone protein DnaJ n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E7U3_9FIRM
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
chaperone protein DnaJ
L1_007_000M1_scaffold_10_115
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

125055..125990
DNA (936bp) protein (312aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ribosomal protein L11 methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DZ62_9FIRM
L1_007_000M1_scaffold_10_116
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(126232..126567)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E5Z5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84202.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_10_117
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(126572..127396)
DNA (825bp) protein (275aa)
ATPases involved in chromosome partitioning n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVD2_9FIRM
ATPases involved in chromosome partitioning {ECO:0000313|EMBL:CCX84200.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ATPases involved in chromosome partitioning
L1_007_000M1_scaffold_10_118
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(127444..128271)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84198.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_10_119
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(128484..129071)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E7T3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84196.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_10_120
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

129335..129745
DNA (411bp) protein (137aa)
Looped-hinge helix DNA binding domain, AbrB family n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5Y3_9FIRM
looped-hinge helix DNA binding domain, AbrB family
Looped-hinge helix DNA binding domain, AbrB family {ECO:0000313|EMBL:CBL15028.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Displaying items 91-120 of 237 in total

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