ggKbase home page

L1_007_000M1_scaffold_10

Search features with annotation key words

Displaying items 1-30 of 237 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_10_1
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

583..1740
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E4C7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83617.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_10_2
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1836..2393)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DU03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83618.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_10_3
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2692..3840)
DNA (1149bp) protein (383aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5N3_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL14928.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_10_4
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4245..5138)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DTR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83620.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_10_5
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5245..6057)
DNA (813bp) protein (271aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E668_9FIRM
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CCX83621.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
AraC-type DNA-binding domain-containing proteins
L1_007_000M1_scaffold_10_6
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6195..7031
DNA (837bp) protein (279aa)
Transcriptional regulator AraC family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E4C9_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CCX83622.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
AraC family transcriptional regulator
L1_007_000M1_scaffold_10_7
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7097..7945)
DNA (849bp) protein (283aa)
Esterase/lipase n=2 Tax=Ruminococcus RepID=D4L5N6_9FIRM
Esterase/lipase
Esterase/lipase {ECO:0000313|EMBL:CBL14931.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_10_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7960..8889)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DXK2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83624.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L1_007_000M1_scaffold_10_9
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8978..9631)
DNA (654bp) protein (218aa)
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DTR7_9FIRM
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases {ECO:0000313|EMBL:CCX83625.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_10_10
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9740..11005
DNA (1266bp) protein (422aa)
3-isopropylmalate dehydratase, large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027, ECO:0000313|EMBL:CBL14933.1};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
3-isopropylmalate dehydratase large subunit n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5N8_9FIRM
L1_007_000M1_scaffold_10_11
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11025..11504
DNA (480bp) protein (160aa)
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032, ECO:0000313|EMBL:CBL14934.1};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
3-isopropylmalate dehydratase small subunit n=2 Tax=Ruminococcus RepID=D4L5N9_9FIRM
L1_007_000M1_scaffold_10_12
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11898..14264)
DNA (2367bp) protein (789aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587, ECO:0000313|EMBL:CBL14936.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Phosphorylase n=2 Tax=root RepID=D4L5P1_9FIRM
L1_007_000M1_scaffold_10_13
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14269..15756)
DNA (1488bp) protein (496aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207, ECO:0000313|EMBL:CBL14937.1}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207, ECO:0000313|EMBL:CBL14937.1};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase n=2 Tax=Ruminococcus RepID=D4L5P2_9FIRM
L1_007_000M1_scaffold_10_14
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15898..16443)
DNA (546bp) protein (182aa)
Competence/damage-inducible protein CinA C-terminal domain n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E4E3_9FIRM
competence/damage-inducible protein CinA C-terminal domain
Competence/damage-inducible protein CinA C-terminal domain {ECO:0000313|EMBL:CCX83637.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_10_15
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16583..17311
DNA (729bp) protein (243aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
RNA methyltransferase, RsmE family (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DXL5_9FIRM
L1_007_000M1_scaffold_10_16
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17583..18278
DNA (696bp) protein (232aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (EC:3.2.2.9)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E7Q5_9FIRM
L1_007_000M1_scaffold_10_17
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18439..20106
DNA (1668bp) protein (556aa)
acetolactate synthase, large subunit (EC:2.2.1.6)
Acetolactate synthase large subunit n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV98_9FIRM
Acetolactate synthase large subunit {ECO:0000313|EMBL:CCX84165.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_10_18
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20403..21887)
DNA (1485bp) protein (495aa)
Uracil-xanthine permease n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVW6_9FIRM
Uracil-xanthine permease {ECO:0000313|EMBL:CCX84385.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
uracil-xanthine permease
L1_007_000M1_scaffold_10_19
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22081..22707
DNA (627bp) protein (209aa)
uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Uracil phosphoribosyltransferase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5Q0_9FIRM
L1_007_000M1_scaffold_10_20
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23012..23752)
DNA (741bp) protein (247aa)
Response regulator of the LytR/AlgR family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DZM6_9FIRM
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CCX84379.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Response regulator of the LytR/AlgR family
L1_007_000M1_scaffold_10_21
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23930..25468)
DNA (1539bp) protein (513aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5Q2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14947.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_10_22
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25468..27075)
DNA (1608bp) protein (536aa)
ABC-type uncharacterized transport system n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E6I1_9FIRM
ABC-type uncharacterized transport system {ECO:0000313|EMBL:CCX84377.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ABC-type uncharacterized transport system.
L1_007_000M1_scaffold_10_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27089..27793)
DNA (705bp) protein (235aa)
ABC-2 type transporter n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E8A3_9FIRM
ABC-2 type transporter {ECO:0000313|EMBL:CCX84376.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ABC-2 type transporter.
L1_007_000M1_scaffold_10_24
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27793..28749)
DNA (957bp) protein (319aa)
ABC-type multidrug transport system, ATPase component n=2 Tax=Ruminococcus RepID=D4L5Q5_9FIRM
ABC-type multidrug transport system, ATPase component
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:CBL14950.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_10_25
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28997..29350
DNA (354bp) protein (118aa)
Stage V sporulation protein AE n=2 Tax=Ruminococcus RepID=D4L5Q6_9FIRM
stage V sporulation protein AE
Stage V sporulation protein AE {ECO:0000313|EMBL:CBL14951.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_10_26
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29520..30434)
DNA (915bp) protein (305aa)
Dockerin type I repeat n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5Q7_9FIRM
Dockerin type I repeat.
Dockerin type I repeat {ECO:0000313|EMBL:CBL14952.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_10_27

Not on your lists

comp(30457..32721)
DNA (2265bp) protein (755aa)
Peptidase C1A papain (Fragment) n=1 Tax=human gut metagenome RepID=K1RUA6_9ZZZZ
Peptidase C1A papain {ECO:0000313|EMBL:EKC52167.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
cell surface-associated cysteine protease
L1_007_000M1_scaffold_10_28
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32969..35707)
DNA (2739bp) protein (913aa)
Predicted membrane protein n=2 Tax=root RepID=R5E893_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CCX84366.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted membrane protein
L1_007_000M1_scaffold_10_29
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35787..36017)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVU2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84365.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_10_30
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36147..37121
DNA (975bp) protein (325aa)
Glycosyltransferases involved in cell wall biogenesis n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5Q9_9FIRM
Glycosyltransferases involved in cell wall biogenesis
Glycosyltransferases involved in cell wall biogenesis {ECO:0000313|EMBL:CBL14954.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Displaying items 1-30 of 237 in total

View Taxonomy