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L1_007_000M1_scaffold_35

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Displaying items 1-30 of 227 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_35_1
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..411)
DNA (411bp) protein (137aa)
Transporter n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8Y5_9FIRM
Na+-dependent transporters of the SNF family
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_35_2
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(589..2673)
DNA (2085bp) protein (695aa)
Type II secretory pathway, pullulanase PulA and related glycosidases (EC:3.2.1.-)
Type II secretory pathway, pullulanase PulA and related glycosidases {ECO:0000313|EMBL:CBL16075.1}; EC=3.2.1.- {ECO:0000313|EMBL:CBL16075.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Type II secretory pathway, pullulanase PulA and related glycosidases n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8Y0_9FIRM
L1_007_000M1_scaffold_35_3

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comp(2890..4584)
DNA (1695bp) protein (565aa)
Carbohydrate-active enzyme n=1 Tax=uncultured organism RepID=D9ZE49_9ZZZZ
Carbohydrate-active enzyme {ECO:0000313|EMBL:ADD61603.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
Glycosidases
L1_007_000M1_scaffold_35_4
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4755..5246
DNA (492bp) protein (164aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5DMG3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL16073.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_35_5

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comp(5408..6415)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=2 Tax=root RepID=R5DZM7_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61605.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L1_007_000M1_scaffold_35_6
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6610..6975
DNA (366bp) protein (122aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8X7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL16072.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_35_7
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7120..7626
DNA (507bp) protein (169aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DMJ0_9FIRM
L1_007_000M1_scaffold_35_8

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7629..8231
DNA (603bp) protein (201aa)
Holliday junction ATP-dependent DNA helicase RuvA n=3 Tax=root RepID=D4L8X6_9FIRM
Holliday junction DNA helicase, RuvA subunit
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61608.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L1_007_000M1_scaffold_35_9

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8235..9323
DNA (1089bp) protein (363aa)
Holliday junction ATP-dependent DNA helicase RuvB n=3 Tax=root RepID=R5DMG8_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61609.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
Holliday junction DNA helicase, RuvB subunit
L1_007_000M1_scaffold_35_10

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9443..10792
DNA (1350bp) protein (450aa)
phosphoglucosamine mutase (EC:5.4.2.10)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZE56_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61610.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L1_007_000M1_scaffold_35_11

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10792..11655
DNA (864bp) protein (288aa)
Predicted SAM-dependent methyltransferases n=3 Tax=root RepID=D4L8X3_9FIRM
Predicted SAM-dependent methyltransferases
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61611.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L1_007_000M1_scaffold_35_12
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11659..12504
DNA (846bp) protein (282aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
ABC-type cobalt transport system, ATPase component n=2 Tax=Ruminococcus RepID=D4L8X2_9FIRM
ABC-type cobalt transport system, ATPase component
L1_007_000M1_scaffold_35_13
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12501..13370
DNA (870bp) protein (290aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ABC-type cobalt transport system ATPase component n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DZP2_9FIRM
ABC-type cobalt transport system, ATPase component
L1_007_000M1_scaffold_35_14
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13364..14176
DNA (813bp) protein (271aa)
ABC-type cobalt transport system permease component CbiQ and related transporters n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DMK1_9FIRM
ABC-type cobalt transport system permease component CbiQ and related transporters {ECO:0000313|EMBL:CCX81443.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L1_007_000M1_scaffold_35_15
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14146..14946
DNA (801bp) protein (267aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DMH7_9FIRM
L1_007_000M1_scaffold_35_16
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14946..16241
DNA (1296bp) protein (432aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8W8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL16063.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_35_17
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16247..16921
DNA (675bp) protein (225aa)
Putative colicin V production protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DRL8_9FIRM
Putative colicin V production protein {ECO:0000313|EMBL:CCX81449.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Colicin V production protein.
L1_007_000M1_scaffold_35_18
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16946..17563
DNA (618bp) protein (206aa)
Phosphatidylglycerophosphate synthase (EC:2.7.8.5)
Phosphatidylglycerophosphate synthase {ECO:0000313|EMBL:CBL16062.1}; EC=2.7.8.5 {ECO:0000313|EMBL:CBL16062.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Phosphatidylglycerophosphate synthase n=2 Tax=Ruminococcus RepID=D4L8W7_9FIRM
L1_007_000M1_scaffold_35_19
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17666..20005
DNA (2340bp) protein (780aa)
ATPases with chaperone activity, ATP-binding subunit n=2 Tax=root RepID=D4L8W6_9FIRM
ATPases with chaperone activity, ATP-binding subunit {ECO:0000313|EMBL:CBL16061.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
ATPases with chaperone activity, ATP-binding subunit
L1_007_000M1_scaffold_35_20
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20358..21236)
DNA (879bp) protein (293aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) n=2 Tax=Ruminococcus RepID=D4L8W5_9FIRM
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL16060.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_35_21
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21236..22114)
DNA (879bp) protein (293aa)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8W4_9FIRM
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL16059.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_35_22
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22201..23556)
DNA (1356bp) protein (452aa)
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DRN2_9FIRM
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CCX81459.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L1_007_000M1_scaffold_35_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23923..24783
DNA (861bp) protein (287aa)
Predicted integral membrane protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DMJ3_9FIRM
Predicted integral membrane protein {ECO:0000313|EMBL:CCX81460.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted integral membrane protein
L1_007_000M1_scaffold_35_24

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25410..25802
DNA (393bp) protein (131aa)
Predicted transcriptional regulators n=3 Tax=root RepID=D4L8W1_9FIRM
Predicted transcriptional regulators
Transcriptional regulator, XRE family {ECO:0000313|EMBL:EKC63508.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L1_007_000M1_scaffold_35_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25942..26205
DNA (264bp) protein (88aa)
30S ribosomal protein S15 n=3 Tax=root RepID=D4L8W0_9FIRM
SSU ribosomal protein S15P
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L1_007_000M1_scaffold_35_26
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26432..28651
DNA (2220bp) protein (740aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DMM1_9FIRM
L1_007_000M1_scaffold_35_27
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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28920..30086
DNA (1167bp) protein (389aa)
Uncharacterized flavoproteins n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8V6_9FIRM
Uncharacterized flavoproteins
Uncharacterized flavoproteins {ECO:0000313|EMBL:CBL16051.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L1_007_000M1_scaffold_35_28
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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31109..32980
DNA (1872bp) protein (624aa)
Fibronectin type III domain n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DML2_9FIRM
Fibronectin type III domain {ECO:0000313|EMBL:CCX81480.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Chitin binding protein
L1_007_000M1_scaffold_35_29
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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32922..43721
DNA (10800bp) protein (3600aa)
Fibronectin type III domain n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DML2_9FIRM
Fibronectin type III domain {ECO:0000313|EMBL:CCX81480.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Fibronectin type III domain.
L1_007_000M1_scaffold_35_30
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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44258..44746
DNA (489bp) protein (163aa)
Transcriptional regulators similar to M. xanthus CarD n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DML5_9FIRM
Transcriptional regulators, similar to M. xanthus CarD
Transcriptional regulators similar to M. xanthus CarD {ECO:0000313|EMBL:CCX81485.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Displaying items 1-30 of 227 in total

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