ggKbase home page

L1_007_000M1_scaffold_107

Search features with annotation key words

Displaying items 61-90 of 190 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_107_61
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(63621..64760)
DNA (1140bp) protein (380aa)
Carboxynorspermidine decarboxylase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y3W1_9PORP
Carboxynorspermidine decarboxylase {ECO:0000313|EMBL:CDD13067.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
carboxynorspermidine decarboxylase
L1_007_000M1_scaffold_107_62
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

65051..65410
DNA (360bp) protein (120aa)
Transcriptional regulator, BlaI/MecI/CopY family n=7 Tax=Parabacteroides RepID=B7BB35_9PORP
Transcriptional regulator, BlaI/MecI/CopY family {ECO:0000313|EMBL:EDN86541.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transcriptional regulator
L1_007_000M1_scaffold_107_63
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

65431..66750
DNA (1320bp) protein (440aa)
TonB-dependent receptor n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X9U0_9PORP
TonB-dependent receptor {ECO:0000313|EMBL:CDD13071.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
TonB
L1_007_000M1_scaffold_107_64
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(66926..69142)
DNA (2217bp) protein (739aa)
Alpha-L-rhamnosidase N-terminal domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y3W4_9PORP
Alpha-L-rhamnosidase N-terminal domain protein {ECO:0000313|EMBL:CDD13072.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glycoside hydrolase
L1_007_000M1_scaffold_107_65
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(69154..71733)
DNA (2580bp) protein (860aa)
Alpha-L-rhamnosidase N-terminal domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X1S4_9PORP
Alpha-L-rhamnosidase N-terminal domain protein {ECO:0000313|EMBL:CDD13074.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glycoside hydrolase
L1_007_000M1_scaffold_107_66
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(71751..73502)
DNA (1752bp) protein (584aa)
Bacterial alpha-L-rhamnosidase n=3 Tax=Parabacteroides RepID=A7AER9_9PORP
Bacterial alpha-L-rhamnosidase {ECO:0000313|EMBL:EDN86545.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
glycoside hydrolase
L1_007_000M1_scaffold_107_67
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(73610..74410)
DNA (801bp) protein (267aa)
rhamnulose-1-phosphate aldolase (EC:4.1.2.19)
Rhamnulose-1-phosphate aldolase n=4 Tax=Parabacteroides RepID=K5ZJL2_9PORP
Putative rhamnulose-1-phosphate aldolase {ECO:0000313|EMBL:EDN86546.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L1_007_000M1_scaffold_107_68
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(74579..75604)
DNA (1026bp) protein (342aa)
L-rhamnose-proton symport protein (RhaT) n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WPA6_9PORP
L-rhamnose-proton symport protein (RhaT) {ECO:0000313|EMBL:CDD13078.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
rhamnose-proton symporter
L1_007_000M1_scaffold_107_69
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(75649..76905)
DNA (1257bp) protein (419aa)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L-rhamnose isomerase (EC:5.3.1.14)
L-rhamnose isomerase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X1S8_9PORP
L1_007_000M1_scaffold_107_70
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(76910..78388)
DNA (1479bp) protein (493aa)
Carbohydrate kinase FGGY family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WUV9_9PORP
Carbohydrate kinase FGGY family protein {ECO:0000313|EMBL:CDD13080.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
carbohydrate kinase, FGGY family protein
L1_007_000M1_scaffold_107_71
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

78412..79377
DNA (966bp) protein (322aa)
Transcriptional regulator, AraC family n=4 Tax=Parabacteroides RepID=A7AES5_9PORP
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EDN86551.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transcriptional regulator
L1_007_000M1_scaffold_107_72
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(79396..79761)
DNA (366bp) protein (122aa)
GtrA-like protein n=4 Tax=Parabacteroides RepID=A7AES6_9PORP
GtrA-like protein {ECO:0000313|EMBL:EDN86552.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L1_007_000M1_scaffold_107_73
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

79888..80439
DNA (552bp) protein (184aa)
Antioxidant AhpC/TSA family n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WPA9_9PORP
Antioxidant AhpC/TSA family {ECO:0000313|EMBL:CDD13083.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
thiol-disulfide isomerase
L1_007_000M1_scaffold_107_74
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(80436..81305)
DNA (870bp) protein (290aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
4-hydroxy-tetrahydrodipicolinate synthase n=3 Tax=Parabacteroides RepID=A7AES8_9PORP
dihydrodipicolinate synthase
L1_007_000M1_scaffold_107_75
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(81379..81894)
DNA (516bp) protein (172aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AES9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13085.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_107_76
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(81891..83891)
DNA (2001bp) protein (667aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
DNA ligase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X9V0_9PORP
DNA ligase
L1_007_000M1_scaffold_107_77
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(83976..84938)
DNA (963bp) protein (321aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AET1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN86557.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L1_007_000M1_scaffold_107_78
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(85002..86105)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AET2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN86558.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L1_007_000M1_scaffold_107_79
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(86109..87572)
DNA (1464bp) protein (488aa)
Sulfate adenylyltransferase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00062, ECO:0000256|SAAS:SAAS00056000}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00062, ECO:0000256|SAAS:SAAS00055979};; ATP-sulfurylase large subunit {ECO:0000256|HAMAP-Rule:MF_00062}; Sulfate adenylate transferase {ECO:0000256|HAMAP-Rule:MF_00062}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
cysN; sulfate adenylyltransferase subunit 1 (EC:2.7.7.4)
Sulfate adenylyltransferase subunit 1 n=4 Tax=Parabacteroides RepID=A7AET3_9PORP
L1_007_000M1_scaffold_107_80
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(87673..88581)
DNA (909bp) protein (303aa)
Sulfate adenylyltransferase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00064}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00064};; ATP-sulfurylase small subunit {ECO:0000256|HAMAP-Rule:MF_00064}; Sulfate adenylate transferase {ECO:0000256|HAMAP-Rule:MF_00064}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
sulfate adenylyltransferase subunit 2 (EC:2.7.7.4)
Sulfate adenylyltransferase subunit 2 n=2 Tax=Parabacteroides RepID=K5ZX67_9PORP
L1_007_000M1_scaffold_107_81
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(88692..89357)
DNA (666bp) protein (222aa)
Adenylyl-sulfate kinase {ECO:0000256|HAMAP-Rule:MF_00065, ECO:0000256|RuleBase:RU004347}; EC=2.7.1.25 {ECO:0000256|HAMAP-Rule:MF_00065, ECO:0000256|RuleBase:RU004347};; APS kinase {ECO:0000256|HAMAP-Rule:MF_00065}; ATP adenosine-5'-phosphosulfate 3'-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00065}; Adenosine-5'-phosphosulfate kinase {ECO:0000256|HAMAP-Rule:MF_00065}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Adenylyl-sulfate kinase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y3X9_9PORP
cysC; putative adenylylsulfate kinase
L1_007_000M1_scaffold_107_82
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(89341..89706)
DNA (366bp) protein (122aa)
TIGR02436 family protein n=5 Tax=Parabacteroides RepID=A7AET6_9PORP
TIGR02436 family protein {ECO:0000313|EMBL:CDD13093.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L1_007_000M1_scaffold_107_83
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(89741..91294)
DNA (1554bp) protein (518aa)
Citrate transporter n=4 Tax=Parabacteroides RepID=A7AET7_9PORP
Citrate transporter {ECO:0000313|EMBL:CDD13094.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
Na+/sulfate symporter
L1_007_000M1_scaffold_107_84
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(91484..92299)
DNA (816bp) protein (272aa)
3'(2'),5'-bisphosphate nucleotidase n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AET8_9PORP
3'(2'),5'-bisphosphate nucleotidase {ECO:0000313|EMBL:EDN86564.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
sulfite synthesis pathway protein CysQ
L1_007_000M1_scaffold_107_85
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(92412..93278)
DNA (867bp) protein (289aa)
Phospholipase, patatin family n=2 Tax=Parabacteroides RepID=A7AET9_9PORP
Phospholipase, patatin family {ECO:0000313|EMBL:EDN86565.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
phosphoesterase
L1_007_000M1_scaffold_107_86
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(93372..94370)
DNA (999bp) protein (333aa)
4-phosphoerythronate dehydrogenase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X1U3_9PORP
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:CDD13099.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
dehydrogenase
L1_007_000M1_scaffold_107_87
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(94511..94648)
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AEU1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN86567.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L1_007_000M1_scaffold_107_88
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(94739..95917)
DNA (1179bp) protein (393aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WUX5_9PORP
two-component system sensor histidine kinase
L1_007_000M1_scaffold_107_89
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(95914..96591)
DNA (678bp) protein (226aa)
Response regulator receiver domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X9W2_9PORP
Response regulator receiver domain protein {ECO:0000313|EMBL:CDD13101.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
two-component system response regulator
L1_007_000M1_scaffold_107_90
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(96641..97102)
DNA (462bp) protein (154aa)
Rare lipoprotein A n=3 Tax=Parabacteroides RepID=K6BGZ3_9PORP
Putative rare lipoprotein A double-psi beta-barrel protein {ECO:0000313|EMBL:EDN86570.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
lipoprotein
Displaying items 61-90 of 190 in total

View Taxonomy