ggKbase home page

L1_007_000M1_scaffold_150

Search features with annotation key words

Displaying items 1-30 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_007_000M1_scaffold_150_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..408)
DNA (408bp) protein (136aa)
IS66 family element, transposase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G5M9_9FIRM
Transposase and inactivated derivatives
IS66 family element, transposase {ECO:0000313|EMBL:EEV02917.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_007_000M1_scaffold_150_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(383..847)
DNA (465bp) protein (155aa)
IS66 family element, transposase (Fragment) n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G5Y4_9FIRM
IS66 family element, transposase {ECO:0000313|EMBL:EEV02772.1}; Flags: Fragment;; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Transposase and inactivated derivatives
L1_007_000M1_scaffold_150_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(855..1139)
DNA (285bp) protein (95aa)
Transposase and inactivated derivatives n=4 Tax=Roseburia intestinalis RepID=D4KLQ8_9FIRM
Transposase and inactivated derivatives
IS66 family element, Orf2 protein {ECO:0000313|EMBL:EEV02208.1}; Flags: Fragment;; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L1_007_000M1_scaffold_150_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1132..1470)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6ARE7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA54533.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L1_007_000M1_scaffold_150_5
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1724..2068)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NM04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC09389.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
putative transposase
L1_007_000M1_scaffold_150_6
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3318..4544
DNA (1227bp) protein (409aa)
Radical SAM additional 4Fe4S-binding SPASM domain protein n=3 Tax=Clostridium difficile RepID=T4PAP8_CLODI
Radical SAM domain-containing protein {ECO:0000313|EMBL:CEN31372.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
radical SAM protein
L1_007_000M1_scaffold_150_7
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4546..5559
DNA (1014bp) protein (338aa)
Radical SAM additional 4Fe4S-binding domain-containing protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBT1_9FIRM
Radical SAM domain-containing protein {ECO:0000313|EMBL:CEN31376.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
radical SAM protein
L1_007_000M1_scaffold_150_8
unknown

Not on your lists

5640..5837
DNA (198bp) protein (66aa)

This feature has no annotations

L1_007_000M1_scaffold_150_9
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6239..7291
DNA (1053bp) protein (351aa)
Serine protease {ECO:0000313|EMBL:CEN31379.1}; EC=3.4.21.62 {ECO:0000313|EMBL:CEN31379.1};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
Subtilase family protein n=2 Tax=Clostridium difficile RepID=T4P4U5_CLODI
peptidase S8 and S53 subtilisin kexin sedolisin
L1_007_000M1_scaffold_150_10
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7285..8988
DNA (1704bp) protein (568aa)
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CEN23883.1}; EC=3.6.3.- {ECO:0000313|EMBL:CEN23883.1};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
ABC transporter related n=1 Tax=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) RepID=D9TS61_THETC
ABC transporter
L1_007_000M1_scaffold_150_11
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9987..10253)
DNA (267bp) protein (89aa)
Uncharacterized protein n=2 Tax=Dorea sp. 5-2 RepID=R9N310_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS77331.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
Transposase
L1_007_000M1_scaffold_150_12
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10637..11011
DNA (375bp) protein (125aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WNP8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX77038.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Helix-turn-helix.
L1_007_000M1_scaffold_150_13
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11018..11746
DNA (729bp) protein (243aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WNP7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX77037.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Response regulator of the LytR/AlgR family
L1_007_000M1_scaffold_150_14
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11733..13040
DNA (1308bp) protein (436aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WP37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX77036.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L1_007_000M1_scaffold_150_15
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13161..13562
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZTF4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM87109.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L1_007_000M1_scaffold_150_16
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13520..13726
DNA (207bp) protein (69aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WP35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX77034.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
L1_007_000M1_scaffold_150_17
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13723..13872
DNA (150bp) protein (50aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WP34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX77033.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
hypothetical protein
L1_007_000M1_scaffold_150_18
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13874..14449
DNA (576bp) protein (192aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WP33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX77032.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Accessory gene regulator B.
L1_007_000M1_scaffold_150_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14700..14903
DNA (204bp) protein (68aa)
Sigma-70, region 4 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQS2_9CLOT
Sigma-70, region 4 {ECO:0000313|EMBL:EEA81610.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Sigma-70, region 4.
L1_007_000M1_scaffold_150_20
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15219..15473
DNA (255bp) protein (85aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WP32_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX77031.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Bacterial regulatory proteins, luxR family.
L1_007_000M1_scaffold_150_21
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15531..16451
DNA (921bp) protein (307aa)
Reverse transcriptase (RNA-dependent DNA polymerase) n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SKP6_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF03094.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
putative recombinase
L1_007_000M1_scaffold_150_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16705..17886
DNA (1182bp) protein (394aa)
Basic membrane lipoprotein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6P8_9FIRM
Basic membrane lipoprotein {ECO:0000313|EMBL:CCZ79131.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
basic membrane lipoprotein
L1_007_000M1_scaffold_150_23
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17896..19596
DNA (1701bp) protein (567aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Roseburia sp. CAG:100 RepID=R7R527_9FIRM
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:CDF45153.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
methyl-accepting chemotaxis sensory transducer
L1_007_000M1_scaffold_150_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19740..22154
DNA (2415bp) protein (805aa)
chitobiose phosphorylase (EC:2.4.1.-)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UM55_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79130.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L1_007_000M1_scaffold_150_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22167..24863
DNA (2697bp) protein (899aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79129.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L1_007_000M1_scaffold_150_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24871..25608)
DNA (738bp) protein (246aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Roseburia sp. CAG:18 RepID=R5ULF0_9FIRM
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CCZ79128.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
AraC-type DNA-binding domain-containing proteins
L1_007_000M1_scaffold_150_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25745..27157
DNA (1413bp) protein (471aa)
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia sp. CAG:18 RepID=R5VEH8_9FIRM
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CCZ79127.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L1_007_000M1_scaffold_150_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27248..28162
DNA (915bp) protein (305aa)
Carbohydrate ABC transporter membrane protein 1 CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia sp. CAG:18 RepID=R5V6P3_9FIRM
Carbohydrate ABC transporter membrane protein 1 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CCZ79126.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L1_007_000M1_scaffold_150_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28168..29031
DNA (864bp) protein (288aa)
Sugar ABC transporter permease n=1 Tax=Roseburia sp. CAG:18 RepID=R5UM52_9FIRM
Sugar ABC transporter permease {ECO:0000313|EMBL:CCZ79125.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
sugar ABC transporter permease
L1_007_000M1_scaffold_150_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29056..32550
DNA (3495bp) protein (1165aa)
Carbohydrate binding domain protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UTU9_9FIRM
Carbohydrate binding domain protein {ECO:0000313|EMBL:CCZ79124.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
laminarinase
Displaying items 1-30 of 85 in total

View Taxonomy